Re: [galaxy-dev] [galaxy-user] LimitInternalRecursion
On Aug 21, 2012, at 4:44 PM, Adhemar wrote:
Hi, There's this error message in my apache log:
[error] Request exceeded the limit of 10 subrequest nesting levels due to probable confguration error. Use 'LimitInternalRecursion' to increase the limit if necessary. Use 'LogLevel debug' to get a backtrace., referer: ...
When I turn the apache debug log on it also shows:
[debug] core.c(3072): r->uri = /galaxy/proxy:http://localhost:8080/proxy:http://localhost:8080/proxy:http://localhost:808..., referer: ...
It seems like mod_rewrite is somehow misconfigured, but I couldb't figure out what it is.
Here is my httpd.con mod_rewrite conf:
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Hi Adhemar, I've moved this over to the galaxy-dev list since it's concerning a local installation. Are there any other RewriteRules defined? Are these directives inside another block, or just inside a <VirtualHost>? It would be useful to see your entire VirtualHost config. --nate
Could you please help me to debug this?
Thank you, Adhemar ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Here is a copy of the whole VirtualHost section. Thanks, Adhemar <VirtualHost lbas046.cnptia.embrapa.br:443> ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn SSLEngine on SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P] <Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user RewriteEngine On RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location> </VirtualHost> 2012/8/22 Nate Coraor <nate@bx.psu.edu>
On Aug 21, 2012, at 4:44 PM, Adhemar wrote:
Hi, There's this error message in my apache log:
[error] Request exceeded the limit of 10 subrequest nesting levels due to probable confguration error. Use 'LimitInternalRecursion' to increase the limit if necessary. Use 'LogLevel debug' to get a backtrace., referer: ...
When I turn the apache debug log on it also shows:
[debug] core.c(3072): r->uri = /galaxy/proxy: http://localhost:8080/proxy:http://localhost:8080/proxy:http://localhost:808..., referer: ...
It seems like mod_rewrite is somehow misconfigured, but I couldb't figure out what it is.
Here is my httpd.con mod_rewrite conf:
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Hi Adhemar,
I've moved this over to the galaxy-dev list since it's concerning a local installation.
Are there any other RewriteRules defined? Are these directives inside another block, or just inside a <VirtualHost>? It would be useful to see your entire VirtualHost config.
--nate
Could you please help me to debug this?
Thank you, Adhemar ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
It's the last rewrite rule that's causing the infinite recursion: RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P] Check out this link: http://httpd.apache.org/docs/current/mod/mod_rewrite.html#rewriterule Look for the table of given rules and resulting substitutions - the proxying appears to be supported for other hosts but not the same host. -Scott ----- Original Message -----
Here is a copy of the whole VirtualHost section. Thanks, Adhemar
<VirtualHost lbas046.cnptia.embrapa.br:443 >
ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn
SSLEngine on
SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
<Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user
RewriteEngine On RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location>
</VirtualHost>
2012/8/22 Nate Coraor < nate@bx.psu.edu >
On Aug 21, 2012, at 4:44 PM, Adhemar wrote:
Hi,
There's this error message in my apache log:
[error] Request exceeded the limit of 10 subrequest nesting levels due to probable confguration error. Use 'LimitInternalRecursion' to increase the limit if necessary. Use 'LogLevel debug' to get a backtrace., referer: ...
When I turn the apache debug log on it also shows:
[debug] core.c(3072): r->uri = /galaxy/proxy: http://localhost:8080/proxy:http://localhost:8080/proxy:http://localhost:808... , referer: ...
It seems like mod_rewrite is somehow misconfigured, but I couldb't figure out what it is.
Here is my httpd.con mod_rewrite conf:
RewriteEngine on
RewriteRule ^/galaxy$ /galaxy/ [R]
RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L]
RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L]
RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L]
RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L]
RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L]
RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Hi Adhemar,
I've moved this over to the galaxy-dev list since it's concerning a local installation.
Are there any other RewriteRules defined? Are these directives inside another block, or just inside a <VirtualHost>? It would be useful to see your entire VirtualHost config.
--nate
Could you please help me to debug this?
Thank you,
Adhemar
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org . Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Adhemar, Could you try the following?: <VirtualHost lbas046.cnptia.embrapa.br:443> ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn SSLEngine on SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem <Proxy http://localhost:8080> Order deny,allow Allow from all </Proxy> RewriteEngine on <Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user RewriteCond %{IS_SUBREQ} ^false$ RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location> RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P] </VirtualHost> On Aug 22, 2012, at 12:38 PM, Adhemar wrote:
Here is a copy of the whole VirtualHost section. Thanks, Adhemar
<VirtualHost lbas046.cnptia.embrapa.br:443>
ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn
SSLEngine on
SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
<Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user
RewriteEngine On RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location>
</VirtualHost>
2012/8/22 Nate Coraor <nate@bx.psu.edu> On Aug 21, 2012, at 4:44 PM, Adhemar wrote:
Hi, There's this error message in my apache log:
[error] Request exceeded the limit of 10 subrequest nesting levels due to probable confguration error. Use 'LimitInternalRecursion' to increase the limit if necessary. Use 'LogLevel debug' to get a backtrace., referer: ...
When I turn the apache debug log on it also shows:
[debug] core.c(3072): r->uri = /galaxy/proxy:http://localhost:8080/proxy:http://localhost:8080/proxy:http://localhost:808..., referer: ...
It seems like mod_rewrite is somehow misconfigured, but I couldb't figure out what it is.
Here is my httpd.con mod_rewrite conf:
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Hi Adhemar,
I've moved this over to the galaxy-dev list since it's concerning a local installation.
Are there any other RewriteRules defined? Are these directives inside another block, or just inside a <VirtualHost>? It would be useful to see your entire VirtualHost config.
--nate
Could you please help me to debug this?
Thank you, Adhemar ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Nate! That line really solved the problem. RewriteCond %{IS_SUBREQ} ^false$ No more errors in my log! Thank you, I really appreciate it. Adhemar 2012/8/22 Nate Coraor <nate@bx.psu.edu>
Hi Adhemar,
Could you try the following?:
<VirtualHost lbas046.cnptia.embrapa.br:443>
ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn
SSLEngine on
SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem
<Proxy http://localhost:8080> Order deny,allow Allow from all </Proxy>
RewriteEngine on
<Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user
RewriteCond %{IS_SUBREQ} ^false$ RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location>
RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
</VirtualHost>
On Aug 22, 2012, at 12:38 PM, Adhemar wrote:
Here is a copy of the whole VirtualHost section. Thanks, Adhemar
<VirtualHost lbas046.cnptia.embrapa.br:443>
ServerName lbas046.cnptia.embrapa.br ErrorLog logs/galaxy_ssl_error_log TransferLog logs/galaxy_ssl_access_log LogLevel warn
SSLEngine on
SSLCertificateFile /etc/pki/tls/certs/lbas046.cnptia.embrapa.br.crt SSLCertificateKeyFile /etc/pki/tls/private/lbas046.cnptia.embrapa.br.key.insecure SSLCACertificateFile /etc/pki/tls/certs/cacert.pem
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
<Location "/galaxy"> AuthType Basic AuthName Galaxy_pam AuthPAM_Enabled on Require valid-user
RewriteEngine On RewriteCond %{LA-U:REMOTE_USER} (.+) RewriteRule . - [E=RU:%1] RequestHeader set REMOTE_USER "%{RU}e" env=RU </Location>
</VirtualHost>
2012/8/22 Nate Coraor <nate@bx.psu.edu> On Aug 21, 2012, at 4:44 PM, Adhemar wrote:
Hi, There's this error message in my apache log:
[error] Request exceeded the limit of 10 subrequest nesting levels due to probable confguration error. Use 'LimitInternalRecursion' to increase the limit if necessary. Use 'LogLevel debug' to get a backtrace., referer: ...
When I turn the apache debug log on it also shows:
[debug] core.c(3072): r->uri = /galaxy/proxy: http://localhost:8080/proxy:http://localhost:8080/proxy:http://localhost:808..., referer: ...
It seems like mod_rewrite is somehow misconfigured, but I couldb't figure out what it is.
Here is my httpd.con mod_rewrite conf:
RewriteEngine on RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/galaxy/static/style/(.*) /opt/bioinformatics/share/galaxy-central/static/june_2007_style/blue/$1 [L] RewriteRule ^/galaxy/static/scripts/(.*) /opt/bioinformatics/share/galaxy-central/static/scripts/packed/$1 [L] RewriteRule ^/galaxy/static/(.*) /opt/bioinformatics/share/galaxy-central/static/$1 [L] RewriteRule ^/galaxy/favicon.ico /opt/bioinformatics/share/galaxy-central/static/favicon.ico [L] RewriteRule ^/galaxy/robots.txt /opt/bioinformatics/share/galaxy-central/static/robots.txt [L] RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P]
Hi Adhemar,
I've moved this over to the galaxy-dev list since it's concerning a local installation.
Are there any other RewriteRules defined? Are these directives inside another block, or just inside a <VirtualHost>? It would be useful to see your entire VirtualHost config.
--nate
Could you please help me to debug this?
Thank you, Adhemar ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
-
Adhemar -
Nate Coraor -
Scott McManus