Hi Curt, The development team has characterized the issue and a correction is pending. For now, the best work-around is to just ignore the error files. Thank you for reporting the problem! Best, Jen Galaxy team On 5/31/11 8:37 AM, Nate Coraor wrote:

Curt Palm wrote:

...

I've been configuring my local instance of galaxy to use trackster according to the instructions on https://bitbucket.org/galaxy/galaxy-central/wiki/Visualization when I run the script: python ./cron/build_chrom_db.py ./tool-data/shared/ucsc/chrom/

I get files that begin with:

<META http-equiv="Content-Script-Type" content="text/javascript"> chr1 247249719 chr1_random 166326 ...

this causes an error in the browser: "Could not load chroms for this dbkey:"

if i delete the first line "<META http-equiv="Content-Script-Type" content="text/javascript">" from the .len file, then trackster works fine.

I'm thinking there is a new line the input to build_chrom_db.py that is not getting stripped by this script

Hi Curt,

This appears to be a problem with the query that is being used for some of the builds. I'm looking in to it now and will let you know what I find out.

--nate

...

thanks,

Curt Palm

******************************************************* Curtis J. Palm cpalm@stanford.edu Stanford Genome Technology Center

MC: 8307 office: 650-812-1994 cell: 408 858-7849 *******************************************************

...

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