Regarding Jellyfish or other k-mer analysis software
23 Sep
2013
23 Sep
'13
3:20 a.m.
Hello! I hope that everybody has a great day! In a pre-assemble analysis step I want to perform a k-mer analysis of the fastq-file to visualize the k-mer coverage distribution (too estimate genome size, heterozygosity, repeats etc). This would preferably be done with Jellyfish. Is there an existing wrapper for jellyfish or any similar k-mer analysis software? I have been searching the toolshed and with Google without any success. I am farly new to Galaxy so any help/input would really be appreciated! Thanks, Johan Schedin
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Johan Schedin