Hi folks, In "Upload files to a data library" form, seems like whatever valid path I enter for linking to data on the server, even with "galaxy" as user and r permissions on the folder and files - I get the "invalid paths" message after submitting? The basic form info:
******************************* Invalid paths: /projects/gia/gia_analysis/blast/homologs_index_Spade_genomes/xml_reports/
Upload option: Upload files from filesystem paths File Format: blastxml
Paths to upload /projects/gia/gia_analysis/blast/homologs_index_Spade_genomes/xml_reports/
Preserve directory structure? [yes or no]
Copy data into Galaxy? Link to files without copying into Galaxy *******************************
Does anyone know a trick to this? Would be nice to have more helpful error explanation here!
My galaxy: 5e605ed6069f+ (stable) release_2014.02.10 . I think it is a pretty normal installation.
Thanks for any tips,
Regards,
Damion
Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
p.s. I do have "allow_library_path_paste = True" set in universe_wsgi.ini
Damion
Solved. It was actually a file permissions thing on an ancestral folder. I will add a trello card to suggest slightly better error reporting on this though.
Regards,
Damion
Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control 655 West 12th Avenue, Vancouver, British Columbia, V5Z 4R4 Canada
galaxy-dev@lists.galaxyproject.org