details: http://www.bx.psu.edu/hg/galaxy/rev/53ddb4b728f7 changeset: 3512:53ddb4b728f7 user: fubar: ross Lazarus at gmail period com date: Wed Mar 10 19:48:28 2010 -0500 description: Reverted missing python version check for zipfile setup Changed download archive names for both libraries and for history items so they're related to the content - uses data.name rather than one fixed string for all

diffstat:

lib/galaxy/web/controllers/dataset.py | 25 ++++++++++++++++--------- lib/galaxy/web/controllers/library_common.py | 13 ++++++++----- 2 files changed, 24 insertions(+), 14 deletions(-)

diffs (153 lines):

diff -r 2af472aa0844 -r 53ddb4b728f7 lib/galaxy/web/controllers/dataset.py --- a/lib/galaxy/web/controllers/dataset.py Wed Mar 10 17:10:43 2010 -0500 +++ b/lib/galaxy/web/controllers/dataset.py Wed Mar 10 19:48:28 2010 -0500 @@ -1,4 +1,4 @@ -import logging, os, string, shutil, re, socket, mimetypes, smtplib, urllib, tempfile, zipfile, glob +import logging, os, string, shutil, re, socket, mimetypes, smtplib, urllib, tempfile, zipfile, glob, sys

from galaxy.web.base.controller import * from galaxy.web.framework.helpers import time_ago, iff, grids @@ -11,6 +11,11 @@ pkg_resources.require( "Paste" ) import paste.httpexceptions

+if sys.version_info[:2] < ( 2, 6 ): + zipfile.BadZipFile = zipfile.error +if sys.version_info[:2] < ( 2, 5 ): + zipfile.LargeZipFile = zipfile.error + tmpd = tempfile.mkdtemp() comptypes=[] ziptype = '32' @@ -204,6 +209,9 @@ def archive_composite_dataset( self, trans, data=None, **kwd ): # save a composite object into a compressed archive for downloading params = util.Params( kwd ) + valid_chars = '.,^_-()[]0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' + outfname = data.name[0:150] + outfname = ''.join(c in valid_chars and c or '_' for c in outfname) if (params.do_action == None): params.do_action = 'zip' # default msg = util.restore_text( params.get( 'msg', '' ) ) @@ -230,7 +238,7 @@ except (OSError, zipfile.BadZipFile): error = True log.exception( "Unable to create archive for download" ) - msg = "Unable to create archive for %s for download, please report this error" % data.name + msg = "Unable to create archive for %s for download, please report this error" % outfname messagetype = 'error' if not error: current_user_roles = trans.get_current_user_roles() @@ -239,7 +247,7 @@ fname = os.path.split(path)[-1] basename = data.metadata.base_name efp = data.extra_files_path - htmlname = os.path.splitext(data.name)[0] + htmlname = os.path.splitext(outfname)[0] if not htmlname.endswith(ext): htmlname = '%s_%s' % (htmlname,ext) archname = '%s.html' % htmlname # fake the real nature of the html file @@ -276,14 +284,14 @@ messagetype = 'error' if not error: trans.response.set_content_type( "application/x-zip-compressed" ) - trans.response.headers[ "Content-Disposition" ] = "attachment; filename=GalaxyCompositeObject.zip" + trans.response.headers[ "Content-Disposition" ] = "attachment; filename=%s.zip" % outfname return tmpfh else: trans.response.set_content_type( "application/x-tar" ) outext = 'tgz' if params.do_action == 'tbz': outext = 'tbz' - trans.response.headers[ "Content-Disposition" ] = "attachment; filename=GalaxyLibraryFiles.%s" % outext + trans.response.headers[ "Content-Disposition" ] = "attachment; filename=%s.%s" % (outfname,outext) archive.wsgi_status = trans.response.wsgi_status() archive.wsgi_headeritems = trans.response.wsgi_headeritems() return archive.stream @@ -294,7 +302,8 @@ @web.expose def display(self, trans, dataset_id=None, preview=False, filename=None, to_ext=None, **kwd): """Catches the dataset id and displays file contents as directed""" - + composite_extensions = trans.app.datatypes_registry.get_composite_extensions( ) + composite_extensions.append('html') # for archiving composite datatypes # DEPRECATION: We still support unencoded ids for backward compatibility try: dataset_id = int( dataset_id ) @@ -329,8 +338,6 @@ trans.log_event( "Display dataset id: %s" % str( dataset_id ) )

if to_ext: # Saving the file - composite_extensions = trans.app.datatypes_registry.get_composite_extensions( ) - composite_extensions.append('html') if data.ext in composite_extensions: return self.archive_composite_dataset( trans, data, **kwd ) else: @@ -340,7 +347,7 @@ valid_chars = '.,^_-()[]0123456789abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ' fname = data.name fname = ''.join(c in valid_chars and c or '_' for c in fname)[0:150] - trans.response.headers["Content-Disposition"] = "attachment; filename=GalaxyHistoryItem-%s-[%s]%s" % (data.hid, fname, to_ext) + trans.response.headers["Content-Disposition"] = "attachment; filename=Galaxy%s-[%s]%s" % (data.hid, fname, to_ext) return open( data.file_name ) if os.path.exists( data.file_name ): max_peek_size = 1000000 # 1 MB diff -r 2af472aa0844 -r 53ddb4b728f7 lib/galaxy/web/controllers/library_common.py --- a/lib/galaxy/web/controllers/library_common.py Wed Mar 10 17:10:43 2010 -0500 +++ b/lib/galaxy/web/controllers/library_common.py Wed Mar 10 19:48:28 2010 -0500 @@ -1312,6 +1312,7 @@ else: error = False try: + outext = 'zip' if action == 'zip': # Can't use mkstemp - the file must not exist first tmpd = tempfile.mkdtemp() @@ -1323,8 +1324,10 @@ archive.add = lambda x, y: archive.write( x, y.encode('CP437') ) elif action == 'tgz': archive = util.streamball.StreamBall( 'w|gz' ) + outext = 'gz' elif action == 'tbz': archive = util.streamball.StreamBall( 'w|bz2' ) + outext = 'bz2' except (OSError, zipfile.BadZipFile): error = True log.exception( "Unable to create archive for download" ) @@ -1357,11 +1360,11 @@ seen.append( path ) if is_composite: # need to add all the components from the extra_files_path to the zip zpath = os.path.split(path)[-1] # comes as base_name/fname - zpathext = os.path.splitext(zpath)[-1] + outfname,zpathext = os.path.splitext(zpath) if zpathext == '': zpath = '%s.html' % zpath # fake the real nature of the html file try: - archive.add(ldda.dataset.file_name,zpath) + archive.add(ldda.dataset.file_name,zpath) # add the primary of a composite set except IOError: error = True log.exception( "Unable to add composite parent %s to temporary library download archive" % ldda.dataset.file_name) @@ -1375,7 +1378,7 @@ archive.add( fpath,fname ) except IOError: error = True - log.exception( "Unable to add %s to temporary library download archive" % fname) + log.exception( "Unable to add %s to temporary library download archive %s" % (fname,outfname)) msg = "Unable to create archive for download, please report this error" messagetype = 'error' continue @@ -1402,11 +1405,11 @@ messagetype = 'error' if not error: trans.response.set_content_type( "application/x-zip-compressed" ) - trans.response.headers[ "Content-Disposition" ] = "attachment; filename=GalaxyLibraryFiles.%s" % action + trans.response.headers[ "Content-Disposition" ] = "attachment; filename=%s.%s" % (outfname,outext) return tmpfh else: trans.response.set_content_type( "application/x-tar" ) - trans.response.headers[ "Content-Disposition" ] = "attachment; filename=GalaxyLibraryFiles.%s" % action + trans.response.headers[ "Content-Disposition" ] = "attachment; filename=%s.%s" % (outfname,outext) archive.wsgi_status = trans.response.wsgi_status() archive.wsgi_headeritems = trans.response.wsgi_headeritems() return archive.stream