Job is queued for imported dataset in library
Hello, I've been trying the newest Galaxy version and there seems to be an issue with it. I am importing a dataset via system filepath (through the admin interface) in a library but it remains in queued status without ever changing. I can still download the dataset though. Has anyone experienced this before? Thank you, Makis Ladoukakis
Hello Makis, What is the newest version? Is it dev branch of github repo or release_15.10 ? Note: The admin interface for datalibs is deprecated, could you please also try using the new UI under Shared Data / Data Libraries. You will see options to import from directories (under 'add datasets' button) if you are logged in as an admin. thank you Martin On Thu, Dec 17, 2015 at 4:03 AM Makis Ladoukakis <makis4ever@hotmail.com> wrote:
Hello,
I've been trying the newest Galaxy version and there seems to be an issue with it. I am importing a dataset via system filepath (through the admin interface) in a library but it remains in queued status without ever changing. I can still download the dataset though.
Has anyone experienced this before?
Thank you, Makis Ladoukakis ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hello Martin, Thanks for your help. I found that the problem was actually in the job_conf.xml file. Due to a bad configuration it couldn't assign handlers to jobs for uploading data. I used the default file and now everything is fixed. (and it was the master branch of the latest release). So it is settled now. Cheers, Makis From: marten@bx.psu.edu Date: Thu, 17 Dec 2015 17:03:26 +0000 Subject: Re: [galaxy-dev] Job is queued for imported dataset in library To: makis4ever@hotmail.com; galaxy-dev@lists.bx.psu.edu Hello Makis, What is the newest version? Is it dev branch of github repo or release_15.10 ? Note: The admin interface for datalibs is deprecated, could you please also try using the new UI under Shared Data / Data Libraries. You will see options to import from directories (under 'add datasets' button) if you are logged in as an admin. thank you Martin On Thu, Dec 17, 2015 at 4:03 AM Makis Ladoukakis <makis4ever@hotmail.com> wrote: Hello, I've been trying the newest Galaxy version and there seems to be an issue with it. I am importing a dataset via system filepath (through the admin interface) in a library but it remains in queued status without ever changing. I can still download the dataset though. Has anyone experienced this before? Thank you, Makis Ladoukakis ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Makis, I am happy to hear that. Thank you for using Galaxy. Martin On Fri, Dec 18, 2015 at 4:03 AM Makis Ladoukakis <makis4ever@hotmail.com> wrote:
Hello Martin,
Thanks for your help. I found that the problem was actually in the job_conf.xml file. Due to a bad configuration it couldn't assign handlers to jobs for uploading data. I used the default file and now everything is fixed. (and it was the master branch of the latest release). So it is settled now.
Cheers, Makis ------------------------------ From: marten@bx.psu.edu Date: Thu, 17 Dec 2015 17:03:26 +0000 Subject: Re: [galaxy-dev] Job is queued for imported dataset in library To: makis4ever@hotmail.com; galaxy-dev@lists.bx.psu.edu
Hello Makis,
What is the newest version? Is it dev branch of github repo or release_15.10 ?
Note: The admin interface for datalibs is deprecated, could you please also try using the new UI under Shared Data / Data Libraries. You will see options to import from directories (under 'add datasets' button) if you are logged in as an admin.
thank you
Martin
On Thu, Dec 17, 2015 at 4:03 AM Makis Ladoukakis <makis4ever@hotmail.com> wrote:
Hello,
I've been trying the newest Galaxy version and there seems to be an issue with it. I am importing a dataset via system filepath (through the admin interface) in a library but it remains in queued status without ever changing. I can still download the dataset though.
Has anyone experienced this before?
Thank you, Makis Ladoukakis ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Makis Ladoukakis
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Martin Čech