Hello Galaxy team,
Mainly the wiki on the local setup of NGS is a bit uncomplete. The download links to the built indexes do not seem to function on http://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup
My box somehow can't make the index files with BWA. This is probably due to memory shortage al though the tool does not specify. The tool just tells me:
$ ./bwa index -a bwtsw -p test /home/muiser/data/Human_data/hg18/chromosomes/hg18.fa [bwa_index] fail to open file '/home/muiser/data/Human_data/hg18/chromosomes/hg18.fa'. Abort! Aborted
It would be great if the files can be downloaded somewhere.
Greetings,
Iwe
galaxy-dev@lists.galaxyproject.org