On Mon, Jun 29, 2015 at 2:48 PM, Alexander Vowinkel <vowinkel.alexander@gmail.com> wrote:

Hi,

I have a tool with filtered outputs (<data [..]><filter>[...]</data>).

A) As I understood the filters are pure python. But if I put it in "<![CDATA[", it doesn't work. I think this should work even better ;)

This sounds wrong - the standard library is handling the CDATA parsing for us and so Galaxy should be looking at an identical representation of the data. Are you sure you are using the CDATA tags correctly? I modified the test tool demonstrating output filters with the following patch (https://gist.github.com/jmchilton/1c8d13c01815a9b0fc8e) and ran the tool tests using the command: ./run_tests.sh -framework -id output_filter and everything seemed fine.

B) The workflow generator doesn't interpret the filters. When I put the tool in a workflow, all possible outputs are shown. This doesn't change when I change an option that would change the output choice.

Can someone fix this? ;)

This would be a nice enhancement - but it would take a lot of effort to implement. I would suspect we are going to be stuck with the display of invalid outputs for a while yet. I've created a Trello card for this issue: https://trello.com/c/Hcm2MlQg

Best, Alexander

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/