Can the latest Galaxy use RPy2 to access R via Python? If not can I have both RPy and RPy2 installed on my Mac at the same time and Galaxy still do the right thing? Dean A. Snyder Senior Programmer/Analyst Center for Inherited Disease Research (CIDR) Johns Hopkins School of Medicine Bayview Research Campus 333 Cassell Dr, Triad Bldg, Suite 2000 Baltimore, MD 21224 www.cidr.jhmi.edu cell:717 668-3048 office:410-550-4629
Hi Dean;
Can the latest Galaxy use RPy2 to access R via Python? If not can I have both RPy and RPy2 installed on my Mac at the same time and Galaxy still do the right thing?
The Galaxy tools use Rpy, the older interface, and to use Rpy2 the code would need to be ported over. Happily, rpy and rpy2 live in two different namespaces in Python site-packages, so they can coexist without any issues. My local Galaxy runs on a machine with both installed without any problems. Brad
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Dean Snyder