I'm running the latest stable.
The 500 error seems to be coming from the toolshed. Do you also get a 500 error at the toolshed URL in my previous message?
There is nothing other than standard info line from the request in my pasted log. I'm not able to get to the log right now, but I'll send it once I get a chance tomorrow.
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
-------- Original message -------- From: Greg Von Kuster greg@bx.psu.edu Date: 06/11/2013 10:00 PM (GMT-05:00) To: Lance Parsons lparsons@princeton.edu Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Toolshed bug related to readme files
Hi Lance,
What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall?
Thanks,
Greg Von Kuster
On Jun 11, 2013, at 3:52 PM, Lance Parsons lparsons@princeton.edu wrote:
I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard).
When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error:
http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picard&ow...
Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aae...
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Hi Lance,
Thanks for the information - I'll have a fix out shortly.
Greg Von Kuster
On Jun 11, 2013, at 10:12 PM, Lance Parsons lparsons@princeton.edu wrote:
I'm running the latest stable.
The 500 error seems to be coming from the toolshed. Do you also get a 500 error at the toolshed URL in my previous message?
There is nothing other than standard info line from the request in my pasted log. I'm not able to get to the log right now, but I'll send it once I get a chance tomorrow.
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
-------- Original message -------- From: Greg Von Kuster greg@bx.psu.edu Date: 06/11/2013 10:00 PM (GMT-05:00) To: Lance Parsons lparsons@princeton.edu Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Toolshed bug related to readme files
Hi Lance,
What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall?
Thanks,
Greg Von Kuster
On Jun 11, 2013, at 3:52 PM, Lance Parsons lparsons@princeton.edu wrote:
I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard).
When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error:
http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picard&ow...
Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aae...
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hello Lance,
This issue should be corrected in change set 9994:f8cf776ff12f, which is currently running on both public tool sheds. Thanks for reporting this!
Greg Von Kuster
On Jun 12, 2013, at 6:25 AM, Greg Von Kuster greg@bx.psu.edu wrote:
Hi Lance,
Thanks for the information - I'll have a fix out shortly.
Greg Von Kuster
On Jun 11, 2013, at 10:12 PM, Lance Parsons lparsons@princeton.edu wrote:
I'm running the latest stable.
The 500 error seems to be coming from the toolshed. Do you also get a 500 error at the toolshed URL in my previous message?
There is nothing other than standard info line from the request in my pasted log. I'm not able to get to the log right now, but I'll send it once I get a chance tomorrow.
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
-------- Original message -------- From: Greg Von Kuster greg@bx.psu.edu Date: 06/11/2013 10:00 PM (GMT-05:00) To: Lance Parsons lparsons@princeton.edu Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Toolshed bug related to readme files
Hi Lance,
What version of Galaxy are you running? Is the 500 error coming from your Galaxy server or the tool shed server? Can you send the relevant information from your Galaxy paster log when attempting to reinstall?
Thanks,
Greg Von Kuster
On Jun 11, 2013, at 3:52 PM, Lance Parsons lparsons@princeton.edu wrote:
I have run into an issue when trying to reinstall a tool that was originally installed via migration scripts (toolshed version of picard).
When I attempt to reinstall (after successfully uninstalling) I get a 500 error. After a bit of poking around, it seems that this URL generates the 500 error:
http://toolshed.g2.bx.psu.edu/repository/get_readme_files?name=picard&ow...
Looks like this changeset is relevant: https://bitbucket.org/galaxy/galaxy-central/commits/f72fd96d3fac5e17ec5c9aae...
-- Lance Parsons - Scientific Programmer 134 Carl C. Icahn Laboratory Lewis-Sigler Institute for Integrative Genomics Princeton University
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
galaxy-dev@lists.galaxyproject.org
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Greg Von Kuster -
Lance Parsons