Bossers, Alex wrote:

Since some time we are observing strange things happening to using files from our local data libraries in our local galaxy-central instance:

The files and hierarchy stay there but when copied to the history..... they turn up as being deleted and can only be used by selecting the view_deleted and undelete option.

This didn't happen before. New libraries I make and adding files to it, do not show this behaviour. We already updated to the latest central version but it did not solve the issue. Could it have happened by an earlier update and got unnoticed? Has anyone else seen this behaviour on existing data libraries and if so, how did you fix it? Or some guides in how to debug it ourselves :-P

Hi Alex, See line 1925 in lib/galaxy/web/controllers/library_common.py. Try adding a bit of debugging to find out if hda.deleted == True when the copied HistoryDatasetAssociation is created, and whether the source LibraryDatasetDatasetAssociation is itself deleted (which should be the only way the resulting hda could be deleted). --nate

Most of these files were linked to be used in galaxy instead of copied. The file locations and rights did not change (AFAIK).

Thanks Alex

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/