details: http://www.bx.psu.edu/hg/galaxy/rev/68c3b25ea133 changeset: 3010:68c3b25ea133 user: Nate Coraor nate@bx.psu.edu date: Wed Nov 11 13:08:11 2009 -0500 description: Properly set the PBS job name when not using staging
diffstat:
lib/galaxy/jobs/runners/pbs.py | 4 +++- 1 files changed, 3 insertions(+), 1 deletions(-)
diffs (18 lines):
diff -r 6b23bba26001 -r 68c3b25ea133 lib/galaxy/jobs/runners/pbs.py --- a/lib/galaxy/jobs/runners/pbs.py Wed Nov 11 11:49:08 2009 -0500 +++ b/lib/galaxy/jobs/runners/pbs.py Wed Nov 11 13:08:11 2009 -0500 @@ -208,11 +208,13 @@ exec_dir = os.path.abspath( os.getcwd() ) # If not, we're using NFS else: - job_attrs = pbs.new_attropl(2) + job_attrs = pbs.new_attropl(3) job_attrs[0].name = pbs.ATTR_o job_attrs[0].value = ofile job_attrs[1].name = pbs.ATTR_e job_attrs[1].value = efile + job_attrs[2].name = pbs.ATTR_N + job_attrs[2].value = "%s" % job_wrapper.job_id exec_dir = os.getcwd()
# write the job script
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