Error during FASTQ preview
Dear all, I've recently had following error occur on our local Galaxy instance. Every time I want to preview a fastq file it gives this: Content Encoding Error The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression. Please contact the website owners to inform them of this problem. Any idea how to solve this...? This is the first time I'm seeing it....I tried changing the data type multiple times (fastq, fastq.gz, fastqsanger...etc) but this doesn't get rid of it. Best regards, Christopher Previti -- *Dr. Christopher Previti* Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4661 christopher.previti@dkfz.de <http://www.dkfz.de/> www.dkfz.de <http://www.dkfz.de/> Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta VAT-ID No.: DE143293537 Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist. Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und löschen Sie die Mitteilung. Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.
Dear all,
I've recently had following error occur on our local Galaxy instance.
Every time I want to preview a fastq file it gives this:
Content Encoding Error
The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression.
Please contact the website owners to inform them of this problem.
Any idea how to solve this...? This is the first time I'm seeing it....I tried changing the data type multiple times (fastq, fastq.gz, fastqsanger...etc) but this doesn't get rid of it.
Best regards,
Christopher Previti
-- Dr. Christopher Previti Genomics and Proteomics Core Facility High Throughput Sequencing (W190) Bioinformatician
German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg Germany Room: B2.102 (INF580/TP3) Phone: +49 6221 42-4661
christopher.previti@dkfz.de www.dkfz.de
Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta VAT-ID No.: DE143293537
Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist. Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und löschen Sie die Mitteilung. Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.
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To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ <div class="gmail_extra"><br><div class="gmail_quote">On Tue, Mar 13, 2018 at 4:02 PM, Previti <span dir="ltr"><<a
This could be a special character unicode issue, but my guess is something has gone wrong with compression. Can you identify the file on disk (easy via the history "i" for information icon if this option is enabled; by default Galaxy does not tell you the file path)? Then try the Unix command "head" on the file to inspect it manually - is it plain text FASTQ? Peter On Tue, Mar 13, 2018 at 4:02 PM, Previti <christopher.previti@dkfz-heidelberg.de> wrote: href="mailto:christopher.previti@dkfz-heidelberg.de" target="_blank">christopher.previti@dkfz-heidelberg.de</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"> <div text="#000000" bgcolor="#FFFFFF"> <p>Dear all,</p> <p>I've recently had following error occur on our local Galaxy instance.</p> <p>Every time I want to preview a fastq file it gives this:</p> <p>Content Encoding Error<br> <br> The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression.<br> <br> Please contact the website owners to inform them of this problem.<br> <br> Any idea how to solve this...? This is the first time I'm seeing it....I tried changing the data type multiple times (fastq, fastq.gz, fastqsanger...etc) but this doesn't get rid of it.<br> </p> <p>Best regards,</p> <p>Christopher Previti<br> </p> <p><br> </p> <p><br> </p> <div class="m_-2862158338684152881moz-signature">-- <br> <b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#0047b9">Dr. Christopher Previti</span></b><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:gray"><br> <font color="#000000">Genomics and </font></span><span style="font-size:10pt;font-family:"Arial","sans-serif"" lang="EN-US">Proteomics Core Facility</span><span style="font-size:10pt;font-family:"Arial","sans-serif"" lang="EN-US"><br> High Throughput Sequencing (W190)<br> Bioinformatician<br> </span> <p class="MsoNormal"><span style="font-size:10pt;font-family:"Arial","sans-serif""><font color="#0047b9">German Cancer Research Center (DKFZ)</font><br> Foundation under Public Law<br> Im Neuenheimer Feld 580<br> 69120 Heidelberg<br> Germany<br> Room: B2.102 (INF580/TP3)<br> Phone: <a href="tel:+49%206221%20424661" value="+496221424661" target="_blank">+49 6221 42-4661</a><br> </span></p> <p class="MsoNormal"><span><a href="http://www.dkfz.de/" target="_blank" data-saferedirecturl="https://www.google.com/url?hl=en&q=http://www.dkfz.de/&source=gmail&ust=1521043877592000&usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#0047b9">christopher.previti@dkfz.de</span></a><br> <a href="http://www.dkfz.de/" target="_blank" data-saferedirecturl="https://www.google.com/url?hl=en&q=http://www.dkfz.de/&source=gmail&ust=1521043877592000&usg=AFQjCNEvBdKF2YTYWA7XNiCe7e4pzzkuwg"><span style="font-size:10.0pt;font-family:"Arial","sans-serif";color:#0047b9">www.dkfz.de</span></a><u></u> <br> <u></u></span></p> <p class="MsoNormal" style="text-autospace:none"><span style="font-size:10pt;font-family:"Arial","sans-serif"" lang="EN-US">Management Board: Prof. Dr. Michael Baumann, Prof. Dr. Josef Puchta<br> VAT-ID No.: DE143293537</span></p> <p class="MsoNormal m_-2862158338684152881style="><span style="font-size:10pt;font-family:"Arial","sans-serif"" lang="EN-US">Vertraulichkeitshinweis: Diese Nachricht ist ausschließlich für die Personen bestimmt, an die sie adressiert ist. <br> Sie kann vertrauliche und/oder nur für den/die Empfänger bestimmte Informationen enthalten. Sollten Sie nicht <br> der bestimmungsgemäße Empfänger sein, kontaktieren Sie bitte den Absender und löschen Sie die Mitteilung. <br> Jegliche unbefugte Verwendung der Informationen in dieser Nachricht ist untersagt.<br> <span style="font-size:10.0pt"><u></u><u></u></span></span></p> <p class="MsoNormal"><span style="font-size:10.0pt"><u></u> <u></u></span></p> <br> <pre class="m_-2862158338684152881moz-signature" cols="72"></pre> </div> </div> <br>______________________________<wbr>_____________________________<br> Please keep all replies on the list by using "reply all"<br> in your mail client. To manage your subscriptions to this<br> and other Galaxy lists, please use the interface at:<br> <a href="https://lists.galaxyproject.org/" data-saferedirecturl="https://www.google.com/url?hl=en&q=https://lists.galaxyproject.org/&..." rel="noreferrer" target="_blank">https://lists.galaxyproject.<wbr>org/</a><br> <br> To search Galaxy mailing lists use the unified search at:<br> <a href="http://galaxyproject.org/search/" data-saferedirecturl="https://www.google.com/url?hl=en&q=http://galaxyproject.org/search/&..." rel="noreferrer" target="_blank">http://galaxyproject.org/<wbr>search/</a><br></blockquote></div><br></div>
participants (2)
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Peter Cock -
Previti