details: http://www.bx.psu.edu/hg/galaxy/rev/82cf78640bc1 changeset: 1625:82cf78640bc1 user: guru date: Tue Nov 11 16:20:12 2008 -0500 description: small modification to incorrect_gops_jobs script to include all HDAs associated with a dataset.

1 file(s) affected in this change:

scripts/others/incorrect_gops_jobs.py

diffs (37 lines):

diff -r bffe6becd372 -r 82cf78640bc1 scripts/others/incorrect_gops_jobs.py --- a/scripts/others/incorrect_gops_jobs.py Tue Nov 11 15:20:36 2008 -0500 +++ b/scripts/others/incorrect_gops_jobs.py Tue Nov 11 16:20:12 2008 -0500 @@ -56,19 +56,20 @@ for od in job.output_datasets: ds = app.model.Dataset.get(od.dataset_id) if not ds.deleted: - hda = app.model.HistoryDatasetAssociation.filter(app.model.HistoryDatasetAssociation.table.c.dataset_id == ds.id)[0] - hist = app.model.History.get(hda.history_id) - if hist.user_id: - user = app.model.User.get(hist.user_id) - jobs[job.id] = {} - jobs[job.id]['dataset_id'] = ds.id - jobs[job.id]['dataset_create_time'] = ds.create_time - jobs[job.id]['dataset_name'] = hda.name - jobs[job.id]['hda_id'] = hda.id - jobs[job.id]['hist_id'] = hist.id - jobs[job.id]['hist_name'] = hist.name - jobs[job.id]['hist_modified_time'] = hist.update_time - jobs[job.id]['user_email'] = user.email + #hda = app.model.HistoryDatasetAssociation.filter(app.model.HistoryDatasetAssociation.table.c.dataset_id == ds.id)[0] + for hda in ds.history_associations: + hist = app.model.History.get(hda.history_id) + if hist.user_id: + user = app.model.User.get(hist.user_id) + jobs[job.id] = {} + jobs[job.id]['dataset_id'] = ds.id + jobs[job.id]['dataset_create_time'] = ds.create_time + jobs[job.id]['dataset_name'] = hda.name + jobs[job.id]['hda_id'] = hda.id + jobs[job.id]['hist_id'] = hist.id + jobs[job.id]['hist_name'] = hist.name + jobs[job.id]['hist_modified_time'] = hist.update_time + jobs[job.id]['user_email'] = user.email

print "Number of Incorrect Jobs: %d\n"%(len(jobs)) print "#job_id\tdataset_id\tdataset_create_time\thda_id\thistory_id\thistory_name\thistory_modified_time\tuser_email"