installing tool dependencies
Hi, I installed a bunch of tools at the same time and ran into some errors. After repairing those tools some of the dependencies installations did not work. If I try to repair the tools again I also get this error message: Internal Server Error Galaxy was unable to successfully complete your request An error occurred. This may be an intermittent problem due to load or other unpredictable factors, reloading the page may address the problem. The error has been logged to our team. the tool I tried is called: Name: camera_annotate Description: [Metabolomics][W4M][LC-MS] CAMERA R Package - Annotation - Returns annotation results (isotope peaks, adducts and fragments) Maybe anyone has an idea how to solve this. Thanks in advance Cheers Jochen -- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch> www.ap.ethz.ch
Hello Jochen, what version of galaxy are you running? When you are doing this you should have a traceback in your logs, this would be helpful to understand what is going on. When you say "I installed a bunch of tools at the same time", did you really trigger multiple installations at the same time, or did you install a suite of tools? I don't think the install framework can handle parallel installations (well). It may work once in a while, but you're better of installing things sequentially. Best, Marius On 12 January 2017 at 10:47, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:
Hi,
I installed a bunch of tools at the same time and ran into some errors. After repairing those tools some of the dependencies installations did not work. If I try to repair the tools again I also get this error message:
Internal Server Error Galaxy was unable to successfully complete your request
An error occurred. This may be an intermittent problem due to load or other unpredictable factors, reloading the page may address the problem.
The error has been logged to our team.
the tool I tried is called: Name: camera_annotate Description: [Metabolomics][W4M][LC-MS] CAMERA R Package - Annotation - Returns annotation results (isotope peaks, adducts and fragments)
Maybe anyone has an idea how to solve this. Thanks in advance
Cheers Jochen
-- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland
Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch> www.ap.ethz.ch ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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Hej Marius,
what version of galaxy are you running?
we are running 15.10 but it will be updated next Monday.
When you are doing this you should have a traceback in your logs, this would be helpful to understand what is going on.
ok I will check the logs for the error.
When you say "I installed a bunch of tools at the same time", did you really trigger multiple installations at the same time, or did you install a suite of tools? I don't think the install framework can handle parallel installations (well). It may work once in a while, but you're better of installing things sequentially.
thats true. I guess that was the reason on all the errors. Thanks Jochen
participants (2)
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Jochen Bick
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Marius van den Beek