AttributeError: 'list' object has no attribute 'missing_meta' when doing multiple="true" input datasets
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
if value and value.missing_meta( check = self.check, skip = self.skip ):
AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I forgot to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these output datasets in my history as the input for this other tool but something seems to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
if value and value.missing_meta( check = self.check, skip = self.skip
): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Hi again,
I tried changing the format to txt and tabular which I have other datasets in my history and still the same error and stack trace in Galaxy.
Is it possible at all to have a select multiple of datasets as an input parameter??
best, Leandro
On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I forgot to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these output datasets in my history as the input for this other tool but something seems to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
if value and value.missing_meta( check = self.check, skip = self.skip
): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Hi again,
Very sorry to ask again, just gotten no repsonse, but is this a Galaxy bug or does anyone have a functioning tool that takes multiple datasets as an input parameter??? i.e.
<param type="data" multiple="true" ... />
regards, Leandro
On Thu, May 19, 2011 at 7:15 PM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi again,
I tried changing the format to txt and tabular which I have other datasets in my history and still the same error and stack trace in Galaxy.
Is it possible at all to have a select multiple of datasets as an input parameter??
best, Leandro
On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I forgot to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these output datasets in my history as the input for this other tool but something seems to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
if value and value.missing_meta( check = self.check, skip = self.skip
): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Hi Leandro,
The Galaxy Team has recently been preparing for and traveling in advance of the Galaxy Community Conference, which begins today. Unfortunately I don't have an answer for you, but when we're all back at work next week, someone should be able to respond.
Thanks, --nate
Leandro Hermida wrote:
Hi again,
Very sorry to ask again, just gotten no repsonse, but is this a Galaxy bug or does anyone have a functioning tool that takes multiple datasets as an input parameter??? i.e.
<param type="data" multiple="true" ... />
regards, Leandro
On Thu, May 19, 2011 at 7:15 PM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi again,
I tried changing the format to txt and tabular which I have other datasets in my history and still the same error and stack trace in Galaxy.
Is it possible at all to have a select multiple of datasets as an input parameter??
best, Leandro
On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I forgot to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these output datasets in my history as the input for this other tool but something seems to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
if value and value.missing_meta( check = self.check, skip = self.skip
): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi Nate,
Thanks for the ping, have fun at the conference! On Tue, May 24, 2011 at 11:22 AM, Nate Coraor nate@bx.psu.edu wrote:
Hi Leandro,
The Galaxy Team has recently been preparing for and traveling in advance of the Galaxy Community Conference, which begins today. Unfortunately I don't have an answer for you, but when we're all back at work next week, someone should be able to respond.
Thanks, --nate
Leandro Hermida wrote:
Hi again,
Very sorry to ask again, just gotten no repsonse, but is this a Galaxy
bug
or does anyone have a functioning tool that takes multiple datasets as an input parameter??? i.e.
<param type="data" multiple="true" ... />
regards, Leandro
On Thu, May 19, 2011 at 7:15 PM, Leandro Hermida <
softdev@leandrohermida.com
wrote:
Hi again,
I tried changing the format to txt and tabular which I have other
datasets
in my history and still the same error and stack trace in Galaxy.
Is it possible at all to have a select multiple of datasets as an input parameter??
best, Leandro
On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I
forgot
to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these
output
datasets in my history as the input for this other tool but something
seems
to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
> validator.validate( value, history )
Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator
object
at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
> if value and value.missing_meta( check = self.check, skip =
self.skip
): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Hi again,
Sorry to ping again about this, just very interested in knowing if this is a missing feature in Galaxy or if I had configured something wrong.
Is it possible in Galaxy to have a tool with a multiple="true" input dataset parameter? It doesn't seem so?
best, Leandro
On Tue, May 24, 2011 at 1:31 PM, Leandro Hermida softdev@leandrohermida.com wrote:
Hi Nate,
Thanks for the ping, have fun at the conference! On Tue, May 24, 2011 at 11:22 AM, Nate Coraor nate@bx.psu.edu wrote:
Hi Leandro,
The Galaxy Team has recently been preparing for and traveling in advance of the Galaxy Community Conference, which begins today. Unfortunately I don't have an answer for you, but when we're all back at work next week, someone should be able to respond.
Thanks, --nate
Leandro Hermida wrote:
Hi again,
Very sorry to ask again, just gotten no repsonse, but is this a Galaxy bug or does anyone have a functioning tool that takes multiple datasets as an input parameter??? i.e.
<param type="data" multiple="true" ... />
regards, Leandro
On Thu, May 19, 2011 at 7:15 PM, Leandro Hermida <softdev@leandrohermida.com
wrote:
Hi again,
I tried changing the format to txt and tabular which I have other datasets in my history and still the same error and stack trace in Galaxy.
Is it possible at all to have a select multiple of datasets as an input parameter??
best, Leandro
On Thu, May 19, 2011 at 6:59 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi Galaxy developers,
Something seems maybe to be wrong with the format="html" type... I forgot to add before that my tool input param the format="html" attribute:
<param type="data" multiple="true" format="html" name="input1" />
In another tool I have it outputs format="html" and this works and displays in Galaxy just fine. I would like to use multiple of these output datasets in my history as the input for this other tool but something seems to be wrong if you try to do this?
a bit lost, Leandro
On Thu, May 19, 2011 at 3:30 PM, Leandro Hermida < softdev@leandrohermida.com> wrote:
Hi,
I have a tool where the input is multi-select of datasets, e.g.:
<param type="data" multiple="true" name="input1" />
I tested it to see what it would pass to my command and I get the following debug page and error in Galaxy:
AttributeError: 'list' object has no attribute 'missing_meta'
The last part of the stack trace looks like:
>> validator.validate( value, history ) Module galaxy.tools.parameters.validation:185 in validate
history <galaxy.model.History object at 0xb8ea190> self <galaxy.tools.parameters.validation.MetadataValidator object at 0xb8e6250> value [<galaxy.model.HistoryDatasetAssociation object at 0xa255550>, <galaxy.model.HistoryDataset ... Association object at 0xb8ea210>]
>> if value and value.missing_meta( check = self.check, skip = >> self.skip ): AttributeError: 'list' object has no attribute 'missing_meta'
What am I doing wrong?
regards, Leandro
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
galaxy-dev@lists.galaxyproject.org
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Leandro Hermida -
Nate Coraor