Hi,

Does this method is still valid : https://wiki.galaxyproject.org/Admin/Config/Performance/Purge%20Histories%20... ?

Here is what I used (not anymore; in a cron):

&<---------------------------------------------&<

#!/bin/bash

# purge galaxy datasets, histories, folders, libraires # not updated since $day

day=$1

GALAXY_HOME="/home/galaxy/galaxyapp"

cd $GALAXY_HOME /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -1 /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -2 -r /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -3 -r /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -5 -r /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -4 -r /usr/bin/python scripts/cleanup_datasets/cleanup_datasets.py universe_wsgi.ini -d $day -6 -r

#/usr/bin/find $GALAXY_HOME/tmp/ -mtime +30 -exec rm -rf "{}" ; #/usr/bin/find $GALAXY_HOME/IOs/ -mtime +30 -exec rm -rf "{}" ; #/usr/bin/find $GALAXY_HOME/job_working_directory/ -mtime +30 -exec rm -rf "{}" ;

&<---------------------------------------------&<

Best, Remy

2016-03-01 15:55 GMT+01:00 Nicola Soranzo nsoranzo@tiscali.it:

You can use tmpwatch on RedHat/CentOS/Fedora or tmpreaper on Debian/Ubuntu.

Cheers, Nicola

On 01/03/16 14:30, Raphenya, Amogelang wrote:

Is there a script that is used to clean up database/tmp

*Amos Raphenya * *Bioinformatics Software Developer* *Department of Biochemistry & Biomedical Sciences* *McMaster University, MDCL **2317* *p: (905) 525-9140 **ext: **22787* *a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1* *e: raphenar@mcmaster.caraphenar@mcmaster.ca raphenar@mcmaster.ca * *skype: amos_raphenya*

On Feb 29, 2016, at 10:21 AM, Björn Grüning < bjoern.gruening@gmail.com bjoern.gruening@gmail.com> wrote:

Hi,

if you are not overwriting this value with a object_store setting, it defaults to 'database/tmp' as written in galaxy.ini. The values are the default values which you see.

Ciao, Bjoern

Am 29.02.2016 um 16:19 schrieb Raphenya, Amogelang:

Hi All,

Where are the temporary files stored if the line below is commented out?

|# Temporary files are stored in this directory. new_file_path = database/tmp|

Thank you.

/ / /*Amos Raphenya* / /Bioinformatics Software Developer/ /Department of Biochemistry & Biomedical Sciences/ /McMaster University, MDCL //2317/ /p: (905) 525-9140 //ext: //22787/ /a: 1280 Main St W.,Hamilton, Ontario, Canada L8S 4K1/ /e: raphenar@mcmaster.ca <mailto:raphenar@mcmaster.ca raphenar@mcmaster.ca> / /skype: amos_raphenya/

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