user names with authentication
Hello, I have a galaxy instance authentication using LDAP. The authentication works fine, and I would like to enable the user upload option. I would like to have: user_library_import_dir = /a/path and for galaxy to look for users with just the username. So if I log in with auser@example.com I want for galaxy to look in /a/path/auser instead of /a/path/auser@example.com Is there anywhere I can set this? Best, Jillian
We would also be looking forward to seeing a solution (or hack) like this. We currently have a a gluster filesystem setup where users drop big data to /gl/tmp/user/. Keeping this format would be best. However, I believe a simple symbolic link would also work with Galaxy. for i in $(ls /gl/tmp/user); do ln -s /gl/tmp/user /gl/tmp/user@uci.edu ;done; -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu On Sun, Apr 14, 2013 at 1:12 AM, Jillian Rowe <jir2004@qatar-med.cornell.edu
wrote:
Hello,
I have a galaxy instance authentication using LDAP. The authentication works fine, and I would like to enable the user upload option.
I would like to have:
user_library_import_dir = /a/path
and for galaxy to look for users with just the username. So if I log in with auser@example.com
I want for galaxy to look in /a/path/auser instead of /a/path/ auser@example.com
Is there anywhere I can set this?
Best, Jillian ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Crazy coincidence, I had the same problem and hadn't even seen the original e-mail from Jillian. My pull request implementing this was merged by Nate earlier this week. https://bitbucket.org/galaxy/galaxy-central/pull-request/157/increased-flexi... You can just grab the three changesets out of there and apply them to your local galaxy repository. Then you just need to set the new `ftp_upload_dir_identifier` option in universe_wsgi.ini to `username`. Hope this helps. -John On Thu, Apr 18, 2013 at 4:07 PM, Adam Brenner <aebrenne@uci.edu> wrote:
We would also be looking forward to seeing a solution (or hack) like this. We currently have a a gluster filesystem setup where users drop big data to /gl/tmp/user/. Keeping this format would be best.
However, I believe a simple symbolic link would also work with Galaxy.
for i in $(ls /gl/tmp/user); do ln -s /gl/tmp/user /gl/tmp/user@uci.edu;done;
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Sun, Apr 14, 2013 at 1:12 AM, Jillian Rowe <jir2004@qatar-med.cornell.edu> wrote:
Hello,
I have a galaxy instance authentication using LDAP. The authentication works fine, and I would like to enable the user upload option.
I would like to have:
user_library_import_dir = /a/path
and for galaxy to look for users with just the username. So if I log in with auser@example.com
I want for galaxy to look in /a/path/auser instead of /a/path/auser@example.com
Is there anywhere I can set this?
Best, Jillian ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
John, that worked! I was able to upload some sample files using usernames, rather then full email address. No errors, no bugs. Thanks! -Adam -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu On Thu, Apr 18, 2013 at 2:18 PM, John Chilton <chilton@msi.umn.edu> wrote:
Crazy coincidence, I had the same problem and hadn't even seen the original e-mail from Jillian. My pull request implementing this was merged by Nate earlier this week.
https://bitbucket.org/galaxy/galaxy-central/pull-request/157/increased-flexi...
You can just grab the three changesets out of there and apply them to your local galaxy repository. Then you just need to set the new `ftp_upload_dir_identifier` option in universe_wsgi.ini to `username`.
Hope this helps.
-John
We would also be looking forward to seeing a solution (or hack) like
On Thu, Apr 18, 2013 at 4:07 PM, Adam Brenner <aebrenne@uci.edu> wrote: this.
We currently have a a gluster filesystem setup where users drop big data to /gl/tmp/user/. Keeping this format would be best.
However, I believe a simple symbolic link would also work with Galaxy.
for i in $(ls /gl/tmp/user); do ln -s /gl/tmp/user /gl/tmp/user@uci.edu;done;
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/ aebrenne@uci.edu
On Sun, Apr 14, 2013 at 1:12 AM, Jillian Rowe <jir2004@qatar-med.cornell.edu> wrote:
Hello,
I have a galaxy instance authentication using LDAP. The authentication works fine, and I would like to enable the user upload option.
I would like to have:
user_library_import_dir = /a/path
and for galaxy to look for users with just the username. So if I log in with auser@example.com
I want for galaxy to look in /a/path/auser instead of /a/path/auser@example.com
Is there anywhere I can set this?
Best, Jillian ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
This is great! I'll try it out early next week, but its good to know someone else is interested in the same feature. ________________________________________ From: Adam Brenner [aebrenne@uci.edu] Sent: Friday, April 19, 2013 12:42 AM To: John Chilton Cc: Jillian Rowe; galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] user names with authentication John, that worked! I was able to upload some sample files using usernames, rather then full email address. No errors, no bugs. Thanks! -Adam -- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/ University of California, Irvine www.ics.uci.edu/~aebrenne/<http://www.ics.uci.edu/~aebrenne/> aebrenne@uci.edu<mailto:aebrenne@uci.edu> On Thu, Apr 18, 2013 at 2:18 PM, John Chilton <chilton@msi.umn.edu<mailto:chilton@msi.umn.edu>> wrote: Crazy coincidence, I had the same problem and hadn't even seen the original e-mail from Jillian. My pull request implementing this was merged by Nate earlier this week. https://bitbucket.org/galaxy/galaxy-central/pull-request/157/increased-flexi... You can just grab the three changesets out of there and apply them to your local galaxy repository. Then you just need to set the new `ftp_upload_dir_identifier` option in universe_wsgi.ini to `username`. Hope this helps. -John On Thu, Apr 18, 2013 at 4:07 PM, Adam Brenner <aebrenne@uci.edu<mailto:aebrenne@uci.edu>> wrote:
We would also be looking forward to seeing a solution (or hack) like this. We currently have a a gluster filesystem setup where users drop big data to /gl/tmp/user/. Keeping this format would be best.
However, I believe a simple symbolic link would also work with Galaxy.
for i in $(ls /gl/tmp/user); do ln -s /gl/tmp/user /gl/tmp/user@uci.edu<mailto:user@uci.edu>;done;
-- Adam Brenner Computer Science, Undergraduate Student Donald Bren School of Information and Computer Sciences
Research Computing Support Office of Information Technology http://www.oit.uci.edu/rcs/
University of California, Irvine www.ics.uci.edu/~aebrenne/<http://www.ics.uci.edu/~aebrenne/> aebrenne@uci.edu<mailto:aebrenne@uci.edu>
On Sun, Apr 14, 2013 at 1:12 AM, Jillian Rowe <jir2004@qatar-med.cornell.edu<mailto:jir2004@qatar-med.cornell.edu>> wrote:
Hello,
I have a galaxy instance authentication using LDAP. The authentication works fine, and I would like to enable the user upload option.
I would like to have:
user_library_import_dir = /a/path
and for galaxy to look for users with just the username. So if I log in with auser@example.com<mailto:auser@example.com>
I want for galaxy to look in /a/path/auser instead of /a/path/auser@example.com<mailto:auser@example.com>
Is there anywhere I can set this?
Best, Jillian ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
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Adam Brenner -
Jillian Rowe -
John Chilton