Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history". When clicking it, there is no response. From apache server access log, I see this message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304
And in the apache error log, I see
File does not exist: /www/htdocs/history, referer: https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest, the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200 15876 "GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history". When clicking it, there is no response. From apache server access log, I see this message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest, the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200 15876 "GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
What revision are you running? I'm seeing my proxy-prefix get appended correctly in both release_15.05 and in current -dev.
On Thu, Jul 23, 2015 at 5:10 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history".
When
clicking it, there is no response. From apache server access log, I see
this
message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest, the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200
15876
"GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Dannon,
The release I am using is v15.03.
Ping
On Thu, Jul 23, 2015 at 10:15 AM, Dannon Baker dannon.baker@gmail.com wrote:
What revision are you running? I'm seeing my proxy-prefix get appended correctly in both release_15.05 and in current -dev.
On Thu, Jul 23, 2015 at 5:10 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history".
When
clicking it, there is no response. From apache server access log, I see
this
message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest,
the
request is not properly routed. It tries to retrive the history page
from
the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200
15876
"GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
I think we were running 15.03.1,
$ hg branch stable $ hg log | head changeset: 17050:6395e7035143 tag: tip parent: 17049:708cab19708d parent: 17048:28113eeee212 user: Nate Coraor nate@bx.psu.edu date: Mon Mar 16 22:50:21 2015 -0400 summary: Merge v15.03.1 to default
It sounds like updating to 15.05 should fix this then...
Peter
On Thu, Jul 23, 2015 at 8:57 PM, Ping Luo luop0812@gmail.com wrote:
Dannon,
The release I am using is v15.03.
Ping
On Thu, Jul 23, 2015 at 10:15 AM, Dannon Baker dannon.baker@gmail.com wrote:
What revision are you running? I'm seeing my proxy-prefix get appended correctly in both release_15.05 and in current -dev.
On Thu, Jul 23, 2015 at 5:10 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history". When clicking it, there is no response. From apache server access log, I see this message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest, the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200 15876 "GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Confirmed, updating to 15.05 fixed the switch history feature for us.
http://galaxy.readthedocs.org/en/master/releases/15.05_announce.html
Now running:
$ hg branch release_15.05 $ hg log | head changeset: 17125:e837a68e8d14 tag: tip parent: 17121:7a4e3a661a76 parent: 17124:46a4ef8850b5 user: Nate Coraor nate@bx.psu.edu date: Fri May 15 15:21:34 2015 -0400 summary: Merge stable to default
Thanks Dannon,
Peter
On Fri, Jul 24, 2015 at 10:41 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
I think we were running 15.03.1,
$ hg branch stable $ hg log | head changeset: 17050:6395e7035143 tag: tip parent: 17049:708cab19708d parent: 17048:28113eeee212 user: Nate Coraor nate@bx.psu.edu date: Mon Mar 16 22:50:21 2015 -0400 summary: Merge v15.03.1 to default
It sounds like updating to 15.05 should fix this then...
Peter
On Thu, Jul 23, 2015 at 8:57 PM, Ping Luo luop0812@gmail.com wrote:
Dannon,
The release I am using is v15.03.
Ping
On Thu, Jul 23, 2015 at 10:15 AM, Dannon Baker dannon.baker@gmail.com wrote:
What revision are you running? I'm seeing my proxy-prefix get appended correctly in both release_15.05 and in current -dev.
On Thu, Jul 23, 2015 at 5:10 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So far everything works except the "Switch to" button in "view all history". When clicking it, there is no response. From apache server access log, I see this message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404 304And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the equest, the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200 15876 "GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
Great, glad it's working!
On Fri, Jul 24, 2015 at 6:00 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Confirmed, updating to 15.05 fixed the switch history feature for us.
http://galaxy.readthedocs.org/en/master/releases/15.05_announce.html
Now running:
$ hg branch release_15.05 $ hg log | head changeset: 17125:e837a68e8d14 tag: tip parent: 17121:7a4e3a661a76 parent: 17124:46a4ef8850b5 user: Nate Coraor nate@bx.psu.edu date: Fri May 15 15:21:34 2015 -0400 summary: Merge stable to default
Thanks Dannon,
Peter
On Fri, Jul 24, 2015 at 10:41 AM, Peter Cock p.j.a.cock@googlemail.com wrote:
I think we were running 15.03.1,
$ hg branch stable $ hg log | head changeset: 17050:6395e7035143 tag: tip parent: 17049:708cab19708d parent: 17048:28113eeee212 user: Nate Coraor nate@bx.psu.edu date: Mon Mar 16 22:50:21 2015 -0400 summary: Merge v15.03.1 to default
It sounds like updating to 15.05 should fix this then...
Peter
On Thu, Jul 23, 2015 at 8:57 PM, Ping Luo luop0812@gmail.com wrote:
Dannon,
The release I am using is v15.03.
Ping
On Thu, Jul 23, 2015 at 10:15 AM, Dannon Baker dannon.baker@gmail.com wrote:
What revision are you running? I'm seeing my proxy-prefix get appended correctly in both release_15.05 and in current -dev.
On Thu, Jul 23, 2015 at 5:10 AM Peter Cock p.j.a.cock@googlemail.com wrote:
Hello Ping,
I can confirm this bug.
I noticed this some time back when the new history was in beta, but neglected to explore what was wrong. Apologies.
When looking at:
http://our_server_name/galaxy/history/view_multiple
Via Firefox I can see the "switch" button is triggering a URL like:
http://our_server_name/history/set_as_current?id=cde77e676c9d11d1
The Apache access log contains lines like this:
"GET /history/set_as_current?id=cde77e676c9d11d1 HTTP/1.1" 404 294 "http://our_server_name/galaxy/history/view_multiple" "Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:39.0) Gecko/20100101 Firefox/39.0"
The Apache error log contains lines like this:
File does not exist: /var/www/html/history, referer: http://our_server_name/galaxy/history/view_multiple
We're using "galaxy" as a prefix for this instance using this in the config:
[app:main] filter-with = proxy-prefix cookie_path = /galaxy
Regards,
Peter
On Wed, Jul 22, 2015 at 8:26 PM, Ping Luo luop0812@gmail.com wrote:
Hello,
Our galaxy server is served under a sub-directory "/myserver". So
far
everything works except the "Switch to" button in "view all
history".
When clicking it, there is no response. From apache server access log, I
see
this message
"GET /history/set_as_current?id=9a8f74b3b768f8f1 HTTP/1.1" 404304
And in the apache error log, I see
File does not exist: /www/htdocs/history, referer:https://xxx.xxx.xxx/myserver/history/view_multiple
Since the prefix "/myserver" is not properly prepended in the
equest,
the request is not properly routed. It tries to retrive the history page from the document root /www/htdocs.
So far, all other requests seems have a proper prefix, for example
"GET /myserver/history/current_history_json HTTP/1.1" 200 1430 "GET /myserver/api/histories/7a11fc800eeb71e9/contents HTTP/1.1" 200 15876 "GET /myserver/history/view_multiple HTTP/1.1" 200 27296 "GET /myserver/static/style/base.css?v=1437576796 HTTP/1.1" 304 -
Please help to resolve the issue.
Thanks,
Ping
galaxy-dev@lists.galaxyproject.org
-
Dannon Baker -
Peter Cock -
Ping Luo