Hello, This question and this Biostar post are the same question, correct? https://biostar.usegalaxy.org/p/7979/ Glad this is resolved. Next time, would be best to post to just one place. Thanks! Jen Galaxy team On 6/10/14 3:55 AM, Israel Bravo wrote:

When trying SAM/BAM to Counts I get the following error message: pysam not installed; please install it

But a) pysam was not in this tool dependencies; b) pysam/0.7.7 is already installe

-- Israel Bravo on about.me

Israel Bravo about.me/bravobih

<http://about.me/bravobih>

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/

-- Jennifer Hillman-Jackson http://galaxyproject.org