We are using environment modules ( http://modules.sourceforge.net/ ) on the cluster and took same approach for the galaxy install. The module files are loaded using .bashrc file of galaxy user. It's also useful for non-galaxy users/admins for running galaxy-tools from command-line by simply loading required module files in their shell environment. -- Shantanu. On Jul 20, 2011, at 10:28 AM, michael burrell (TSL) wrote:

Good afternoon,

More of a general discussion point, where is the best place to put the environmental variable declarations within galaxy.

To date I have been placing them as exports in the run.sh, though I can not help but wonder if there is a better place, which is appropriate whatever method you use to kick off galaxy.

Thanks

Michael.

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