Hi, I tried posting this using the contact repo owner but it's giving me error turn on debug mode message. I tried installing emboss_5 on ubuntu 12.04 but got an error (from the gui) In file included from clique.c:1:0: ../include/phylip.h:23:20: fatal error: emboss.h: No such file or directory compilation terminated. make[1]: *** [clique.o] Error 1 make: *** [all-recursive] Error 1 Compiling on the command line by hand using commands in tool dep xml showed issues with X* libraries. In shed_tools/....../tool_dependencies.xml I changed the --without-x line to --without-X and the tool installed fine Kevin.