From olivier.filangi@rennes.inra.fr Tue Oct  2 11:23:19 2012
From: Olivier Filangi <olivier.filangi@rennes.inra.fr>
To: galaxy-france@lists.galaxyproject.org
Subject: Re: [Galaxy-france] Gestion d'un nombre =?utf-8?q?ind=C3=A9fini?= de
 fichiers output / Managment of undefined outputs
Date: Tue, 02 Oct 2012 17:23:16 +0200
Message-ID: <506B06E4.6070703@rennes.inra.fr>
In-Reply-To: <506B02CA.8000503@toulouse.inra.fr>
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Bonjour,
J'ai eu =C3=A9galement ce probl=C3=A8me.
J'ai choisi de cr=C3=A9er un seul fichier resultat au format HTML (donc dans =

le XML du tool il y a un seul fichier output)
et d'"embarquer" l'ensemble des fichiers soit sous forme d image ou de=20
fichier =C3=A0 telecharger avec un encodage base64

exemple pour un fichier texte zipp=C3=A9 :||

||echo '<a href=3D"data:application/x-gzip;base64,'`gzip --stdout $current_fi=
le | base64 -w 0`'">'>> $html__||||||||

|echo $comments_to_down >>$html__|

|echo '</a>' >> $html__|

||

||
|si tu ne zip pas le type mime est text/plain|

||

|
|ou pour une image :

<img  alt=3D"description" src=3D"data:image/png;base64,'''`base64 -w 0 $curre=
nt_file_png`'"/>'


ne pas oublier d'effacer les fichiers gener=C3=A9s par l'application apr=C3=
=A8s ce=20
traitement

Olivier


Le 02/10/2012 17:05, Sarah Maman a =C3=A9crit :
> Bonjour,
>
> Je souhaiterai int=C3=A9grer un script perl (script quantifier de mirdeep2)=
=20
> dans un nouveau tool de mon instance locale de Galaxy.
> Le probl=C3=A8me est que ce script g=C3=A9n=C3=A8re plusieurs outputs (fich=
iers=20
> images) mais le nombre d'outputs est variable d'une fois sur l'autre.
> Il me semble que le nombre d'outputs doit =C3=AAtre d=C3=A9fini et fixe dan=
s le=20
> fichier xml du tool ? Ou existe t'il un moyen pour que le nombre=20
> d'outputs ne soit pas pr=C3=A9cis=C3=A9 =C3=A0 l'avance ?
>
> Merci d'avance pour votre aide,
> Sarah Maman
>
>
> **************
>
> Hello,
>
> I would like to integrate a perl script (script quantifier of=20
> mirdeep2) in a new tool in my local instance of Galaxy.
> The problem is that this script generates several outputs (image=20
> files), but the number of outputs varies from one time to another.
> It seems that the number of outputs must be defined and fixed in the=20
> tool xml file ? Or is there a way to not specify the number of outputs ?
>
> Thank you in advance for your help,
> Sarah Maman
> _______________________________________________
> Galaxy-France mailing list
> Galaxy-France(a)lists.bx.psu.edu
> http://lists.bx.psu.edu/listinfo/galaxy-france





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