USP-FCFRP

• Link:

  • Laboratory of Biological Physics at USP-FCFRP

• Domain/Purpose:

  • Summary of the currently available tools:

    • ProtPred-GROMACS: Ab initio protein structure prediction framework which uses evolutionary algorithms to optimize objective functions such as potential energy, number of hydrogen bonds and solvent accessible surface area. 

      • 2PG: Faster and simpler algorithm in which one objective function is optimized
        3PG: A more robust approach in which multiple objective functions are optimized at the same time

      Protein Validation: Check the integrity of a PDB file
      Protein Desolvation: Remove a solvation layer around your protein.

• Comments:

• User Support:

  • Laboratory of Biological Physics

• Quotas: 

  • "You can use tools developed at our laboratory and by our colaborators for free. You just need to sign up to the server using your academic e-mail."

• Sponsor(s):

  • Laboratory of Biological Physics, part of the Faculty of Pharmaceutical Sciences of Ribeirão Preto (FCFRP) at the University of São Paulo (USP).

1. Galaxy-P
2. GWIPS-viz
3. SymD (not up currently)