On Oct 21, 2013, at 4:19 PM, Bart Gottschalk <bgottsch@umn.edu> wrote:
What version of Galaxy did you clone and are running when you get this error?Once we have this answer we can help you debug the error.On Mon, Oct 21, 2013 at 8:25 AM, John Chilton <chil0060@umn.edu> wrote:
---------- Forwarded message ----------
From: Gerben Menschaert <gerben.menschaert@gmail.com>
Date: Mon, Oct 21, 2013 at 4:40 AM
Subject: Re: ASMS Follow Up
To: John Chilton <chil0060@umn.edu>Hello John Mitchel,
I hope you can help out.PeptideShaker used to be on our Galaxy-P environment, but I removed it.I'm trying to re-install it again from the toolshed.While doing so, I bumped into the following error (see below).Could you point me in the good directory.Many thanks in advance,Gerben MenschaertPS: Also, is there a special GALAXY-P user/development mailing list?⇝KeyError: 'tool_panel_section'URL: http://localhost:8081/galaxy/admin_toolshed/prepare_for_install?includes_tools_for_display_in_tool_panel=True&encoded_repo_info_dicts=90a33e331bc412ca17eb74a9796d006a4cb070ce%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&includes_tools=True&tool_shed_url=http%3A%2F%2Ftoolshed.g2.bx.psu.edu%2F&includes_tool_dependencies=True
Module weberror.evalexception.middleware:364 inrespondview
>> app_iter = self.application(environ, detect_start_response)
Module paste.httpexceptions:633 in__call__view
>> return self.application(environ, start_response)
Module galaxy.web.framework.base:132 in__call__view
>> return self.handle_request( environ, start_response )
Module galaxy.webapps.galaxy.controllers.admin_toolshed:850 inprepare_for_installview
>> repository_util.handle_tool_shed_repositories( trans, installation_dict, using_api=False )
Module tool_shed.galaxy_install.repository_util:338 inhandle_tool_shed_repositoriesview
>> new_tool_panel_section=new_tool_panel_section )
Module tool_shed.util.repository_dependency_util:149 increate_repository_dependency_objectsview
>> common_install_util.activate_repository( trans, installed_tool_shed_repository )
Module tool_shed.util.common_install_util:36 inKeyError: 'tool_panel_section'activate_repositoryview
>> tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
On Jun 17, 2013, at 4:52 PM, John Chilton <chil0060@umn.edu> wrote:On behalf of myself and my colleague Jim Johnson, I wanted to thank
you for dropping by one or both of our posters. You can find digital
copies of both poster below.
"Reproducible Proteomic Workows using Extensions to the Galaxy Framework"
http://getgalaxyp.org/documents/asms2013_galaxy_extensions.pdf
"Building Proteomic Application Platforms for Cloud Computing
Environments with CloudBioLinux"
http://getgalaxyp.org/documents/asms2013_cloud_computing.pdf
We had a great time last Monday and agree that a lot of good ideas
were generated. If you have specific questions, comments, or
suggestions please do not hesitate to drop us a line. (I have cc'ed
Jim Johnson, as well Dr. Pratik Jagtap the Galaxy-P project manager,
Dr. Ben Lynch the head of application development at MSI, and Dr.
Timothy Griffin the principle investigator for Galaxy-P on this
e-mail. Feel free to direct questions to whomever you feel is most
appropriate.)
You can find more information about Galaxy-P at http://getgalaxyp.org/
and try our public server at https://usegalaxyp.org/. You can find
more information about Galaxy more broadly at
http://galaxyproject.org/ and CloudBioLinux at
http://cloudbiolinux.org/. All of our source code is open source and
available at various places on BitBucket and GitHub, if you are
interested in any particular part of what we have done let me know
which and I can point you to it.
Thanks again,
-John
------------------------------------------------
John Chilton
Senior Software Developer
University of Minnesota Supercomputing Institute
Office: 612-625-0917
Cell: 612-226-9223