Re: [galaxy-proteomics] Worked Proteomics Example for a Galaxy Workshop?
Many thanks Dave and Pratik, This list is a great resource. On 31 May 2014, at 6:47 am, Dave Clements <clements@galaxyproject.org<mailto:clements@galaxyproject.org>> wrote: Hi All, Many thanks to Pratik for sending on several new talks and posters, and details about the workshop: https://wiki.galaxyproject.org/Events/ASMS2014 or http://bit.ly/asms2014 Please let me know if there is anything else. Thanks, Dave C On Fri, May 30, 2014 at 9:17 AM, Dave Clements <clements@galaxyproject.org<mailto:clements@galaxyproject.org>> wrote: Hello all, If you are going to ASMS, all things Galaxy (I found 5) are listed at: https://wiki.galaxyproject.org/Events/ASMS2014 or http://bit.ly/asms2014 It prints out nicely. Feel free to take a few copies with you. Thanks, Dave C. On Thu, May 29, 2014 at 4:34 PM, Dave Clements <clements@galaxyproject.org<mailto:clements@galaxyproject.org>> wrote: Hi Pratik, John, and Jorrit, Thanks for all the suggestions and input. The good news is that I can wait for a new Galaxy-P 101 to be released. Perhaps fearing my complete lack of knowledge in proteomics, the workshop hosts have opted to have me cover topics that I can at least spell instead. However, long-term, it would be a wonderful thing to have a Galaxy proteomics worked example that people could use in workshops. And Jorrit, I just looked at the program for ASMS. There are several Galaxy related workshops, talks and posters this year. I'll create a wiki page listing everything, and perhaps a flyer ... I'll post to this list once that's ready. Thanks for everything, Dave C. On Thu, May 29, 2014 at 12:11 AM, Jorrit Boekel <jorrit.boekel@scilifelab.se<mailto:jorrit.boekel@scilifelab.se>> wrote: Hey Dave, An alternative to the problem John mentions would be to skip the RAW files altogether and start from a mzML data file downloaded from a repository (e.g. proteomexhange.org<http://proteomexhange.org/>) somewhere. To abstract your workshop from the fact that mass spec instrument manufacturers don’t provide proper accessible output formats. Hope to see many of you at ASMS in two weeks! cheers, — Jorrit Boekel Proteomics systems developer BILS / Lehtiö lab Scilifelab Stockholm, Sweden On 29 May 2014, at 00:20, John Chilton <jmchilton@gmail.com<mailto:jmchilton@gmail.com>> wrote:
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Ira Cooke