Hi, I would like to get an advice on using OpenMS in Galaxy, especially on connecting TOPPview to visualize the results. Can anyone help me? Thanks, Martin -- Martin Hubálek, Ph.D. Institute of Organic Chemistry and Biochemistry, CAS Flemingovo nám. 2, 16610 Praha 6, Czech Republic tel.: 220183117
Hi Martin, To use OpenMS in Galaxy and connect to TOPPView: Install Galaxy and the OpenMS tools from the Galaxy Tool Shed. Run your OpenMS analysis in Galaxy and export the results (featureXML or consensusXML). Open TOPPView on your local machine and load the exported files via File > Open. This will allow you to visualize your mass spectrometry data effectively. If you need more help, just let me know! Best, <a href="https://bloodmoneygame.io/">bloodmoney</a>
This whole OpenMS thing sounds stressful, like trying to dodge every attack in a bad time simulator! https://bad-time-simulator.com/ Imagine juggling all those data points and trying to visualize them effectively. I wonder if there's a way to gamify the process somehow, make it less daunting. Maybe a points system for successful data analysis? Just a thought!
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