From nate@bx.psu.edu Mon Jul 13 09:20:07 2009
From: Nate Coraor <nate@bx.psu.edu>
To: galaxy-user@lists.galaxyproject.org
Subject: Re: [galaxy-user] Fresh install has wrong layout
Date: Mon, 13 Jul 2009 09:20:06 -0400
Message-ID: <4A5B3486.2020805@bx.psu.edu>
In-Reply-To: <8b6eced30907070040s34704869uaa3909c62a5071ed@mail.gmail.com>
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Any idea what's generating all the PHP errors?  This is unrelated to Galaxy.

Erick Antezana wrote:
> Nate,
> 
>   thanks for the piece of code. It worked perfectly on my test server. 
> However, when I tried to put it the production serve, whose apache makes 
> use of VirtualServers in contrast to my test server, it didn't work :-( 
> I am able to authenticate using my ldap login/password but then the web 
> site shows just a blank page... there is no message in paster.log; 
> however, the apache log says:
> 
> [Tue Jul 07 09:35:29 2009] [error] PHP Warning:  
> include(/apache/prod/html/php/menuLoader.php) [<a 
> href='function.include'>function.include</a>]: failed to open stream: No 
> such file or directory in /apache/prod/html/ApacheErr/error401.html on 
> line 2
> [Tue Jul 07 09:35:29 2009] [error] PHP Warning:  include() [<a 
> href='function.include'>function.include</a>]: Failed opening 
> '/apache/prod/html/php/menuLoader.php' for inclusion 
> (include_path='.:/usr/share/pear:/usr/share/php') in 
> /apache/prod/html/ApacheErr/error401.html on line 2
> [Tue Jul 07 09:35:29 2009] [error] File does not exist: 
> /apache/prod/html/galaxy
> [Tue Jul 07 09:35:29 2009] [error] PHP Warning:  require_once(Menu.inc) 
> [<a href='function.require-once'>function.require-once</a>]: failed to 
> open stream: No such file or directory in 
> /apache/prod/html/ApacheErr/error404.html on line 2
> [Tue Jul 07 09:35:29 2009] [error] PHP Fatal error:  require_once() [<a 
> href='function.require'>function.require</a>]: Failed opening required 
> 'Menu.inc' (include_path='.:/usr/share/pear:/usr/share/php') in 
> /apache/prod/html/ApacheErr/error404.html on line 2
> [Tue Jul 07 09:35:29 2009] [error] File does not exist: 
> /apache/prod/html/favicon.ico, referer: http://intranet/galaxy/
> [Tue Jul 07 09:35:29 2009] [error] PHP Warning:  require_once(Menu.inc) 
> [<a href='function.require-once'>function.require-once</a>]: failed to 
> open stream: No such file or directory in 
> /apache/prod/html/ApacheErr/error404.html on line 2, referer: 
> http://intranet/galaxy/
> [Tue Jul 07 09:35:29 2009] [error] PHP Fatal error:  require_once() [<a 
> href='function.require'>function.require</a>]: Failed opening required 
> 'Menu.inc' (include_path='.:/usr/share/pear:/usr/share/php') in 
> /apache/prod/html/ApacheErr/error404.html on line 2, referer: 
> http://intranet/galaxy/
> 
> 
> Do you know what could be the problem?
> 
> thanks,
> Erick
> 
> 2009/7/3 Nate Coraor <nate(a)bx.psu.edu <mailto:nate(a)bx.psu.edu>>
> 
>     Erick Antezana wrote:
> 
>         Nate,
> 
>         in the URL you just sent, are the "Apache configuration with
>         Galaxy not at the web server root" and "External authentication
>         and $REMOTE_USER"  mutually exclusive?
> 
>         cheers,
>         Erick
> 
> 
>     Not at all.  Here's a sample configuration:
> 
>     <Location /galaxy>
>        AuthType Basic
>        AuthName Galaxy
>        AuthUserFile /htpasswd
>        Require valid-user
>     </Location>
> 
>     # Required to pass REMOTE_USER
>     <Proxy http://127.0.0.1:8080>
>        Order deny,allow
>        Allow from all
>     </Proxy>
> 
>     RewriteEngine on
> 
>     RewriteCond %{IS_SUBREQ} ^false$
>     RewriteCond %{LA-U:REMOTE_USER} (.+)
>     RewriteRule . - [E=RU:%1]
>     RequestHeader set REMOTE_USER %{RU}e
> 
>     RewriteRule ^/galaxy$ /galaxy/ [R]
>     RewriteRule ^/galaxy(.*) http://127.0.0.1:8080$1 [P]
> 
>     --nate
> 
> 


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