Hi,
I minor annoyance that I had found with the
current implementation of “Tophat for Illumina (version
1.5.0)” in the public usegalaxy.org site:
When you submit sequences for alignment,
the dropdown list of available genomes gives 2 dog genome
choices – BUT both are labeled the same – “Dog(Canis lupus
familiaris): canFam2”.
After trial and error I found that the
second (lower on the list) choice is actually “Dog(Canis lupus
familiaris): canFam3.1”.
Hopefully this can be corrected at some
point – maybe when the next release comes out from the Broad.
Michael
Michael H. Court,
BVSc, PhD, Diplomate ACVA
Professor and
William R. Jones Endowed Chair
Individualized
Medicine Program
Pharmacogenomics
Laboratory
Department of
Veterinary Clinical Sciences
College of
Veterinary Medicine, Washington State University
100 Grimes Way,
Pullman, WA 99164-6610
Office:
509-335-0817 Cell: 774-287-7082 Fax: 509-335-0880
michael.court@vetmed.wsu.edu
www.vetmed.wsu.edu
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