Hi,<div><br></div><div>I&#39;m in the process of adding a proteomics Perl script into a local copy of Galaxy.</div><div><br></div><div>It seems like the version command in the galaxy/tools/myTools/myPerlTool.xml needs to have a full pathname.</div>

<div><br></div><div>The doco indicates this should be enough:  &lt;version_command&gt;myPerlTool -version&lt;/version_command&gt;, and the few examples of it&#39;s use in galaxy/tools/*/*.xml are not full path, but on my installation this gives, in the Tool Version section of the View Details page of the run result </div>

<div><br><table class="tabletip" style="font-size:12px;border-collapse:collapse;width:613px;text-align:left;color:rgb(48,48,48);font-family:&#39;Lucida Grande&#39;,verdana,arial,helvetica,sans-serif;line-height:14px;background-color:rgb(255,255,255)">

<tbody><tr><td style="border-bottom-width:1px;border-bottom-style:solid;border-bottom-color:rgb(221,221,221);background-color:rgb(238,238,238)">/bin/sh: myPerlTool.pl: command not found</td></tr></tbody></table><br>I was expecting the version command to pick up the same path/environment as the main run.</div>

<div><br></div><div>(Also, trivia dept, the doco in <a href="http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#A.3Cversion_command.3E_tag_set">http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#A.3Cversion_command.3E_tag_set</a>  still references &quot;&lt;version_string&gt;&quot; instead of &quot;&lt;version_command&gt;&quot;. I see from a search of source code commits this name change was made in July 2011. )</div>

<div><br></div><div>Thanks !</div><div><br></div><div>Greg E</div><div><br></div><div><br>-- <br>Greg Edwards<br><a href="mailto:gedwards2@gmail.com" target="_blank">gedwards2@gmail.com</a><br>
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