Update (and a post to both lists!)
Nate pointed me to the real problem. https/http isn't a problem at bitbucket anymore. The issue is where you are installing (/etc) and write permissions. But, it is not recommended anyway. You will want to install in your home directory. To get there, type:
prompt$ cd
Just that will put you in your home. To see where this is on your system path, type this:
prompt$ pwd
To see what else is here, type:
prompt$ ls
A google for mac unix commands will bring up various basic help/tutorials and such as you need them.
Hopefully this gets you going!
Jen
Galaxy team
On 8/10/12 9:59 AM, Jennifer Jackson wrote:
Hi Edward,
Sorry, the "https" is probably also a problem. I thought about
commenting about that before, but was wasn't sure about how much help
you would need exactly or if you were logged into bitbucket or not. So
please use this:
prompt$ hg clone http://bitbucket.org/galaxy/galaxy-dist
If you ever need to clone again or update, the commands are in the News
Brief summaries + top of each full report:
http://wiki.g2.bx.psu.edu/DevNewsBriefs
** Note the "%" is used here to designate the terminal prompt. This is
fairly common, so now that you know, you will be able to recognize it.
Also look for the "$" and ">" characters to represent the prompt at the
start of a shared command line in various documents (Galaxy or other).
I'll just use "prompt$" right now to be clear.
For Mercurial, to confirm the install, you can type at the terminal
prompt from anywhere:
prompt$ hg version
prompt$ hg help
The "quick start" and "guide" at http://mercurial.selenic.com/ is a good
place for basic hg commands. A web search will return plenty of other
choices.
This is the last email in this thread I think we should send to both
lists - from here forward let's just cc to galaxy-dev@bx.psu.edu for
follow-up and leave the user list off - no need to post to both. The
other question about MAC resource we can do the same with, once answered.
Best,
Jen
Galaxy team
On 8/10/12 8:53 AM, Edward Turk wrote:
Hi Jen,
Yes, it is best to assume I know nothing about programming. I installed
Mercurial, but don't know how to check that it was successful other than
it said so. Removing % helped, but said I do not have permission:
Install Galaxy on Mac OS10.7
1. Open Applications/Utilities/Terminal.app
2. Check Python version by pasting in "python -V", no quotes, and hit
return
*response = Python 2.7.1*
3. Install Mercurial
*Response = "Successful Installation" but I don't know how to check
this *
4. Get Galaxy by pasting in "hg clone
https://bitbucket.org/galaxy/galaxy-dist/", no quotes, and hit return
*Response = warning: bitbucket.org <http://bitbucket.org> certificate
with fingerprint
24:9c:45:8b:9c:aa:ba:55:4e:01:6d:58:ff:e4:28:7d:2a:14:ae:3b not verified
(check hostfingerprints or web.cacerts config setting)*
*destination directory: galaxy-dist*
*abort: Permission denied: /private/etc/galaxy-dist*
Thanks,
Edward
On Aug 10, 2012, at 11:36 AM, Jennifer Jackson wrote:
Hi Edward -
This may sound very simple, but did the "%" get included in the
command to do the download by mistake? You'll want to remove that from
the command string run again (was used to note the terminal prompt, is
not a part of the command). So, just this:
prompt$ hg clone https://bitbucket.org/galaxy/galaxy-dist/
I just tested the galaxy-dist repository and there are no issues at
bitbucket (right now). So, otherwise the MAC install should be fine.
Maybe this helps?
Jen
Galaxy team
On 8/10/12 8:00 AM, Edward Turk wrote:
Both responses worked for checking python version, but trying to
download gave an error:
Install Galaxy on Mac OS10.7
1. Open Applications/Utilities/Terminal.app
2. Check Python version by pasting in "python -V", no quotes, and hit
return
*response = Python 2.7.1*
3. Get Galaxy by pasting in "% hg clone
https://bitbucket.org/galaxy/galaxy-dist/", no quotes, and hit return
*response = -bash: fg: %: no such job*
On Aug 10, 2012, at 8:58 AM, Hotz, Hans-Rudolf wrote:
Hi Edward
I am moving your e-mail to 'galaxy-dev' since it's about a local
Galaxy
instance.
I don't think there are any differences between installing Galaxy on
Linux and Mac OS X. Hence you can follow the step-by-step instructions
on the wiki (well, there are actually only two steps anyway...):
http://wiki.g2.bx.psu.edu/Admin/Get%20Galaxy
WRT checking the python version:
just type 'python -V' on the command line, eg on my old MacBook:
bash-3.2$ python -V
Python 2.5.1
bash-3.2$
Hope this helps
Regards, Hans
On 08/10/2012 02:37 PM, Edward Turk wrote:
Hello,
Could someone provide instructions for installing galaxy on a Mac OS
10.7? The
instructions provided by galaxy start off by asking me to check my
python
version, but I don't know how to do that. I figure someone has
step-by-step
instructions or a screen cast?
Thank you,
Edward
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org <http://usegalaxy.org>. Please keep all replies on
the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://galaxyproject.org
--
Jennifer Jackson
http://galaxyproject.org