On Mon, Feb 13, 2012 at 2:17 AM, Arthur Zheng <haoz021@gmail.com> wrote:
On Sun, Feb 12, 2012 at 4:34 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Sun, Feb 12, 2012 at 10:28 PM, Arthur Zheng <haoz021@gmail.com> wrote:
Hi,
I have downloaded and installed a local instance of galaxy on the linux server using my user account according to here: http://main.g2.bx.psu.edu/
Then I ran the following command:
sh run.sh and accessed galaxy through the local firefox browser on the server http://localhost:8080
Now I am trying to use some NGS files for FASTQ Groomer. Each file is in the server disk already, but very large (~8G each). I was not able to use the "upload file from your computer" function under the "Get Data" tab (maybe because each file is too large).
What am I supposed to do?
Thank you!
Arthur
The method you tried "uploads" the file from your computer back to itself - making a copy as it goes with lots of overhead. You should probably consider the procedure here which allows you to avoid even making a copy on disk but point at the existing files already on the server:
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
Peter
Hi Peter,
I have followed the link you provided and selected the option "Upload directory of files". Now my NGS data are in the library, and I am wondering how I can feed them to FASTQ Groomer?
Thanks!
Arthur
You must add library files to your current history via the "Shared Data" menu at the top of the Galaxy window. Peter