Hi Davide, Use the Text Manipulation and Edit Attribute functions to build a "custom" Custom track for UCSC display. 1 - load a track line (with an optional browser line) into your history 2 - concatenate it with your tab file 3 - convert (label) the data as "bed" 4 - the "display at UCSC" function then interprets the track (& browser) lines just the same as if you loaded the file directly at UCSC I created a history for you as an example: http://main.g2.bx.psu.edu/u/jen-bx-galaxy-edu/h/label-ct-for-ucsc-display The history starts with a bed file from UCSC main. I deconstructed it down into a plain tab file then built it back up into a CT in bed format with a track line. I expanded (cloned) some steps for clarity - see the "Edit Attribute" comments for details about what I did. Please be sure to let us know if would like more help or find something unexpected. Have a nice weekend, Jen Galaxy Team On 8/6/10 1:16 AM, Davide Cittaro wrote:
Hi there, is there a way to display a bed file to UCSC setting the track name and description automatically? I mean, if the bed file contains only the data tabular data, how can I add "track type=bed name=dataset.name" at display time? I get a generic "User track" instead, that means that I have to rename it every time in the UCSC browser (otherwise it will be overwritten by any other custom track )
d /* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it <mailto:davide.cittaro@ifom-ieo-campus.it> */
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