Thank you!

Uma Chandran

From: Ian Donaldson [mailto:Ian.Donaldson@manchester.ac.uk]
Sent: Wednesday, March 12, 2014 5:04 AM
To: Chandran, Uma; galaxy-user@lists.bx.psu.edu
Subject: RE: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

Hi Uma,

If you look under 'NGS Mapping' there is 'Map with Bowtie for SOLiD' and 'Map with BWA for SOLiD'
They take fastq, but you can use 'NGS: QC and manipulation' > 'Convert' to generate a fastq file from fastqc and qual files.  Or at least you could for SOLiD4 files.

Ian

---

From: galaxy-user-bounces@lists.bx.psu.edu [galaxy-user-bounces@lists.bx.psu.edu] on behalf of Chandran, Uma [chandranur@upmc.edu]
Sent: 11 March 2014 13:14
To: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] can galaxy analyze SOLiD XSQ dataset except csfasta/qual data?

Are there mappers for SoLiD 5500 on Galaxy? If so, do they take csfasta files as input?

Thanks

Uma Chandran