Using Rpy to interface Galaxy and R was not a good idea in my experience, when Rpy was used Galaxy seams to not be able to handle the interruption of a file being loaded (e.g network failure or refresh action in the browser) we solved the problem by using Popen instead.

Jorge

On Mon, May 10, 2010 at 10:55 PM, Kanwei Li <kanwei@gmail.com> wrote:

Hi Rodolfo,

You are probably not using the macports python to run galaxy... please
check by entering "which python" in console.

Thanks,

Kanwei

On Mon, May 10, 2010 at 3:59 AM, Rodolfo Aramayo <raramayo@tamu.edu> wrote:
> People,
>
> I have installed Galaxy on my laptop following standard procedures
> I have installed R, NumPy and RPy via MacPorts yet Galaxy seems to
> complain it cannot connect to them
> ==
> An error occurred running this job: Traceback (most recent call last):
> File "/Library/WebServer/Documents/galaxy_dist/tools/stats/gsummary.py",
> line 4, in <module>
> from rpy import *
> ImportError: No module named rpy
> ==
> Any ideas/suggestions would be greatly appreciated
>
> Thanks
>
> Rodolfo Aramayo
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> http://lists.bx.psu.edu/listinfo/galaxy-user
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