I used the &quot;Barcode Splitter&quot; tool to split multiplexed RNA-Seq libraries into separate files. I would now like to map the reads from each of these fastq files to a reference genome. However, the fastq files generated by Barcode Splitter don&#39;t appear in the &quot;Fastq File&quot; pull-down menus within the the BWA or Bowtie launch pages. I&#39;m probably missing something obvious, but what is the trick for making these files available for the mapping tools? Do I need to import them into my history somehow?<div>

<br></div><div>Thanks!<br>Jeremy</div>