Hi Yuval,

You should be able to retrieve RNA co-ordinates using the interface to UCSC genome browser under 'Get data'  section on Galaxy. For information on which tracks and tables to choose, please refer these links which contain answers to this topic from UCSC mailing list:
http://www.soe.ucsc.edu/pipermail/genome/2007-August/014299.html
http://www.soe.ucsc.edu/pipermail/genome/2007-May/013491.html
http://www.soe.ucsc.edu/pipermail/genome/2006-April/010436.html

Thanks for using Galaxy,
Guru
Galaxy team.
  
On Jan 27, 2010, at 11:59 AM, Kluger, Yuval wrote:

Hi,

I would appreciate any suggestion how one can use Galaxy to obtain coordinates of human and mouse of all known tRNAs.
Similarly how one can do that for other types such as miRNAs and other small RNAs .

Thanks,

Yuval


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Guruprasad Ananda
Graduate Student
Bioinformatics and Genomics
The Pennsylvania State University