14 Apr
2011
14 Apr
'11
6:01 p.m.
On Thu, Apr 14, 2011 at 4:15 PM, Guru Ananda <guru@psu.edu> wrote:
Hi Peter, There isn't a built-in Galaxy tool to compute GC%, yet.
Thanks Guru.
You could perhaps use UCSC's hgGcPercent binary, which lets you compute GC% for BED intervals. You can find the same here: http://genome.ucsc.edu/FAQ/FAQdownloads#download27
I'll be working with simple sequence files (FASTA, or even FASTQ, SFF, etc) rather than BED files, but I'll keep that in mind. Peter