Hi,
 
I am new to galaxy but I think your tools may be what I need.  I simply have a .bed file with amplicons and their chromosome,  start and stop location in the human genome.  I simply want to align the .bed file amplicons to the HG19 and have a file I can export that which will tell me what exons are covered by the amplicons.  Is this possible?  If so I have no idea how to do this yet using galaxy.  Do I need to upload the HG19 or is that in your system already.  Can codons that are covered by the start and stop locations be extracted as well.?
 
Thanks
keith
 
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