Hello Asifullah, It would be helpful if you would be able to share your history. Please note which exact datasets (by number) you are having problems saving. Use Options -> Share or Publish -> click on the button to Share via link and then email that to me. Thank you, Jen Galaxy team On 12/15/10 7:56 AM, vasu punj wrote:
I have done the same it gav eme bam index file when i removed the extension index or as such it come out to be not right bam file format as recognized by various tools Thanks
--- On *Wed, 12/15/10, Jennifer Jackson /<jen@bx.psu.edu>/* wrote:
From: Jennifer Jackson <jen@bx.psu.edu> Subject: Re: [galaxy-user] Fwd: Need a generous help regarding uploading To: "vasu punj" <punjv@yahoo.com> Cc: "galaxy-user@bx.psu.edu" <galaxy-user@bx.psu.edu> Date: Wednesday, December 15, 2010, 9:52 AM
Hello Asifullah,
Click on the "save" icon for the dataset to initiate a download. This icon is shaped like a little purple disk on the very left side of the dataset's box in the right history pane.
Hopefully this is helpful,
Thank you,
Jen Galaxy team
On 12/15/10 7:47 AM, vasu punj wrote: > Hi, > Can we save Bam file from Tophat out put if so how can we do that please. > Thanks. > > --- On *Wed, 12/15/10, Jennifer Jackson /<jen@bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=jen@bx.psu.edu>>/* wrote: > > > From: Jennifer Jackson <jen@bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=jen@bx.psu.edu>> > Subject: Re: [galaxy-user] Fwd: Need a generous help regarding uploading > To: "asifullah khan" <asifullah111@gmail.com <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>> > Cc: galaxy-user@bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu> > Date: Wednesday, December 15, 2010, 9:38 AM > > Hello Asifullah, > > The Galaxy tool "Get Data -> Upload File" has instructions for > uploading > data to the FTP server. We recommend using the 3rd party utility > FileZilla as a desktop FTP client. > > http://file-zilla.com/ > > Hopefully this will get you started, > > Best! > > Jen > Galaxy team > > ps: In the future, if you could send questions directly to > galaxy-user@bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu>, > it would be very helpful for us. > > On 12/12/10 8:32 AM, Kelly Vincent wrote: > > > > > > Begin forwarded message: > > > >> *From: *asifullah khan <asifullah111@gmail.com <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com> > >> <mailto:asifullah111@gmail.com <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>>> > >> *Date: *December 12, 2010 11:01:27 AM EST > >> *To: *galaxy-user-owner@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu> > >> <mailto:galaxy-user-owner@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>> > >> *Subject: **Need a generous help regarding uploading* > >> > >> Dear All, > >> > >> I am in trouble to upload 1.2Gb illumine data on Galaxy page for > >> subsequent assembling and analysis steps. I am basically a biologist > >> and new regarding utility of modern bioinformatics tools. some one > >> have suggested to upload first your data on a http web page then it > >> would be easy to be uploaded on GALaxy. But it is also not possible > >> for me as having little computer knowledge. So could some one > help me > >> generously regarding these issue. I will highly appreciate > his/her help. > >> > >> Regards > >> Asifullah Khan > > > > > > > > _______________________________________________ > > galaxy-user mailing list > > galaxy-user@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> > > http://lists.bx.psu.edu/listinfo/galaxy-user > > -- > Jennifer Jackson > http://usegalaxy.org <http://usegalaxy.org/> <http://usegalaxy.org/> > _______________________________________________ > galaxy-user mailing list > galaxy-user@lists.bx.psu.edu <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> > <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu> > http://lists.bx.psu.edu/listinfo/galaxy-user > >
-- Jennifer Jackson http://usegalaxy.org <http://usegalaxy.org/>
-- Jennifer Jackson http://usegalaxy.org