Hi, Jorge,

Galaxy source includes the Galaxy interfaces but not the third party executables for tools like fastqc or bwa. They can be automagically installed if you install the tool from a tool shed but at a guess, you are working on your desktop with the fastqc tool in a recent clone of galaxy? Unfortunately, the tool can't run until you have the fastqc software working in a particular way hinted at in the guide for the fastqc tool on the page at http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies - try that please?

There are things to do to make your instance more reliable and stable too - eg http://wiki.galaxyproject.org/Admin/Config/Performance/ProductionServer

On Mon, Dec 9, 2013 at 9:48 PM, Jorge Braun <braun_bio@hotmail.com> wrote:

Hi mates!!

I have a problem with Galaxy... FastQC doesn't run because the file FastQC.py cann't find executable file FastQC.xml. Almost, that file is in the same directory called rgenetics, (seeing Linux terminal) .

someone can help me?

thanks and have a nice day :)