I am interested in getting regions flanking TSS, I am using Glaxaxy and have downloaded TSS sites using <div>this post steps</div><div><a href="https://lists.soe.ucsc.edu/pipermail/genome/2011-June/026175.html">https://lists.soe.ucsc.edu/pipermail/genome/2011-June/026175.html</a>
</div><div><br></div><div>Now what I would like to do is to get 5000 bp upstream an downstream using flank tool in galaxy, but i realize it only gave me option for gene start or whole gene.</div><div>Is it possible to extract 5000 bp upstream and downstream regions across tss start site . Once I have that then I want to find non overlaping genes in my regions from chipseq data.</div>
<div><br></div><div>Thanks</div><div><br></div><div>Kanwar</div><div><br></div>