Joanne: Look under "NGS: QC and manipulation". Thanks, anton Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Jun 10, 2011, at 1:10 PM, Joanne Rampersad wrote: Hi Is there an stand alone ( ie not a component of Bowtie etc ) program in galaxy that can filter or trim fastq data? thanks ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/