Hi Tomaž,
The script depends on galaxy libraries, but could probably be set up standalone if you made the appropriate libraries available -- the source is distributed with galaxy, see https://bitbucket.org/galaxy/galaxy-central/src/tip/tools/fastq/fastq_trimme...
-Dannon
On Wed, Apr 17, 2013 at 7:30 AM, Tomaz Rijavec tomaz@ifb.si wrote:
Dear "Galaxy Team",
I have a question regarding the fastq quality trimmer (by sliding window) tool. What is the script running behind it? Is it a modified version of the fastx_quality_trimmer found in the fastx tools package? Is there a standalone version of it one can set up locally and run it from the command line. Thanks for all the info you can provide.
best regards, Tomaž
-- Lep pozdrav / Best Regards, dr. Tomaž Rijavec
Inštitut za fizikalno biologijo d.o.o. / Toplarniška ulica 19, 1000 Ljubljana / T: 01 587 54 70 / www.ifb.si Institute of Physical Biology / Toplarniška ulica 19, SI-1000 Ljubljana, Slovenia / T: +3861 587 54 70 / www.ifb.si
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