Dear Anton, Sorry for not replying before, I was away. Indeed, I cannot reproduce the bug, but in the meantime BioMart has upgraded to release 50, so I assume that fixed it. So, I can now export tabular format from BioMart. I managed to convert the file to genomic intervals, and from there to BED. For the record, I had to select "interval" format after clicking the pencil icon. Thank you very much for your help Alexandre Anton Nekrutenko wrote:
Dear Alexandre:
We cannot reproduce this error in our environment. Can you send tell us about your OS and browser. Also, if you expand (click) the dataset that is imported from BioMart, you will see an eye icon. If you right click on that icon, you will be able to "Copy link location". Can you send this location to us?
Finally, to convert tab delimited file to genomic intervals (similar to BED or GFF) you need to click on the pencil icon adjacent to the dataset. There, you will be able to set chromosome, start, end, and strand columns.
Please, let me know if you have further issues.
Thanks,
anton galaxy team
-- -------------------------------------------------------- Alexandre Gattiker Bioinformatics & Biostatistics Core Facility EPFL School of Life Sciences / Faculté des Sciences de la vie FSV http://people.epfl.ch/Alexandre.Gattiker