Joachim , Thanks that is exactly I was looking as Qualimap is exhausting memory. Thanks Geert. On Fri, Sep 6, 2013 at 12:32 AM, Joachim Jacob | VIB | <joachim.jacob@vib.be
wrote:
Hi Shamsher,
Another alternative is to use bamqc from the qualimap suite. The wrapper you can find at: http://toolshed.g2.bx.psu.edu/**view/joachim-jacob/qualimap_**suite<http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite>
You need to install this tool in a local Galaxy, with the qualimap suite installed and perl (see README).
Cheers, Joachim
On 09/04/2013 09:59 PM, shamsher jagat wrote:
I am looking for a tool to perform QC of Bam file especially following
functions: 1. BAsic information and stat. 2. Coverage across reference features- gene/ transcripts. Is it possible to do it in Galaxy? Thanks
-- Joachim Jacob Contact details: http://www.bits.vib.be/index.**php/about/80-team<http://www.bits.vib.be/index.php/about/80-team>