Hi,<div><br></div><div>I am receiving the following error when I try to run the Indel Analysis tool on a sam file.  I kept the Frequency threshold at the default 0.015.</div><div><br></div><div><br></div><div><div>Traceback (most recent call last):</div>

<div>  File &quot;/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py&quot;, line 227, in </div><div>    if __name__==&quot;__main__&quot;: __main__()</div><div>  File &quot;/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py&quot;, line 84, in __main__</div>

<div>    add_to_mis_matches( mis_matches[ chrom ], pos, bases )</div><div>  File &quot;/galaxy/home/g2main/galaxy_main/tools/indels/indel_analysis.py&quot;, line 34, in add_to_mis_matches</div><div>    mis_matches[ pos + j ] = { base: 1 }</div>

<div>MemoryError</div><div><br></div><div><br></div><div>Prior to that I tried with Frequency threshold 0.0 and it ran for days on end without any results. And I&#39;ve tried Frequency threshold of 0.10 and it gave and error that said &quot;Killed&quot; with no explaination.</div>
<div><br></div><div>Is there an error with the tool?</div>
<div><br></div><div>Thanks</div><div><br></div><div>Evan</div>-- <br>Evan Schwab<div>Research Associate</div><div>Megason Lab</div><div>Department of Systems Biology</div><div>Harvard Medical School</div><div>200 Longwood Ave</div>

<div>Boston, MA 02115</div><div><a href="tel:908-938-3779" target="_blank">908-938-3779</a></div><br>
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