Hi,<br><br>I have upgraded my local install by getting the latest source like this:<br><br>   hg pull -u<br><br>then I compared the *.sample.xml files against my *.xml files (tool_conf.xml).<br><br>I have also upgraded my DB (from version 6 to 7).<br>
<br>I have also launched :<br><br>    sh run_functional_tests.sh<br><br>and I got a message:<br><br>...<br>*** This program requires python version 2.5 or higher<br>*** Current python version is: 2.4.3.final.0<br>...<br><br>
I have python 2.4.3. Do I need to upgrade it?<br><br>During the tests execution I saw the following error messages:<br><br>...<br>Test uploading encode data ... ERROR<br>...<br>...<br>Gencode Partition ( gencode_partition1 ) &gt; Test-1 ... FAIL<br>
...<br>Stitch MAF blocks ( Interval_Maf_Merged_Fasta2 ) &gt; Test-1 ... FAIL<br>Stitch MAF blocks ( Interval_Maf_Merged_Fasta2 ) &gt; Test-2 ... FAIL<br>...<br>Summary Statistics ( Summary_Statistics1 ) &gt; Test-1 ... FAIL<br>
...<br>BLAT ( blat_wrapper ) &gt; Test-1 ... FAIL<br>...<br>Fetch taxonomic representation ( Fetch Taxonomic Ranks ) &gt; Test-1 ... FAIL<br>Poisson two-sample test ( poisson2test ) &gt; Test-1 ... FAIL<br>Poisson two-sample test ( poisson2test ) &gt; Test-2 ... FAIL<br>
Compute phastOdds score ( phastOdds_for_intervals ) &gt; Test-1 ... FAIL<br>LAV to BED ( lav_to_bed1 ) &gt; Test-1 ... FAIL<br>...<br>FAILED (failures=38, errors=5)<br><br>the rest are OK, some errors and failures I guess are due to the fact that I do not have some tools installed (e.g. BLAT)<br>
<br>Do I need to perform any other operation in order to upgrate my local install? (what about the &quot;eggs&quot;? Do I need to check for egg updates? how?)<br><br>thanks,<br>Erick<br>