Binnaz: Please, in the future forward such questions to galaxy-user@bx.psu.edu mailing list. This is the most reliable way to get your queries answered. If you carefully go through http://usegalaxy.org/galaxy101 you will see how to count occurrences of features (such as LINES) within genomic ranges (such as (ChrX:144,000,000-146,500,000)). Thanks! anton Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Apr 19, 2012, at 12:53 PM, Binnaz Yalcin wrote:
Dear Anton,
Can I do an anrichment analysis in Galaxy? if so, how?
I want to know whether a region on mouse chromosome X (ChrX:144,000,000-146,500,000 bp) is enriched with LINE elements, compared to the rest of the chromosome X.
Any advice would be much more appreciated.
Thanks
Best, Binnaz YALCIN