On Mon, Nov 5, 2012 at 3:03 PM, Scott McManus <scottmcmanus@gatech.edu> wrote:

I forgot to add my value of DRMAA_LIBRARY_PATH. Note that I just need
DRMAA_LIBRARY_PATH to point to the library being used. So in the example
below, I had this:

> echo $DRMAA_LIBRARY_PATH
/usr/lib/libdrmaa.so

-Scott
Have you installed SGE on the same machine? If so, then you should be able to
do a "locate libdrmaa.so", which should point to SGE's DRMAA library. For example,
on a machine that I use, I see this:

$ locate libdrmaa.so
/usr/lib/libdrmaa.so
/usr/lib/libdrmaa.so.1.0
$ ls /usr/lib/libdrmaa*
/usr/lib/libdrmaa.so /usr/lib/libdrmaa.so.1.0
$ ls -la /usr/lib/libdrmaa.so
lrwxrwxrwx 1 root root 15 Apr 18 2012 /usr/lib/libdrmaa.so -> libdrmaa.so.1.0

You may also want to try "updatedb" (again, assuming you're using Linux) to index
the files on your machine. Finally, if you can't find it, then you should check if you
actually have SGE installed on that machine. I like to use "dpkg" on Ubuntu/Debian
and "yum" on Centos to manipulate packages.

-Scott
I'm trying to install Galaxy on our SGE cluster (using the Unified method).

I installed galaxy-dist, and now I'm on this section:
drmaa egg
The drmaa egg is provided by Galaxy, but you must tell it where your resource manager's DRMAA library is located, and this is done with the$DRMAA_LIBRARY_PATH environment variable:
% export DRMAA_LIBRARY_PATH=/galaxy/lsf/7.0/linux2.6-glibc2.3-x86_64/lib/libdrmaa.so.1.0.3
% export DRMAA_LIBRARY_PATH=/galaxy/sge/lib/lx24-amd64/libdrmaa.so.1.0
However I can't locate the the file libdrmaa.so.1.0.3 anywhere. In fact I don't have have an lsf nor sge directory within galaxy-dist.

Thanks,

Greg

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The Galaxy User list should be used for the discussion of
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